General

@ref: 67770

BacDive-ID: 164680

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Brevibacterium profundi JCM 33845 is a mesophilic bacterium that was isolated from Deep ocean sediment in the Western Pacific Ocean at a depth of 7068 m.

NCBI tax id

• NCBI tax id: 2761954
• Matching level: species

strain history

• @ref: 67770
• history: G. Zhang; Third Inst. of Oceanogr., Min. of Nat. Resour., China; O1.

doi: 10.13145/bacdive164680.20241212.9.2

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Micrococcales
• family: Brevibacteriaceae
• genus: Brevibacterium
• species: Brevibacterium profundi
• full scientific name: Brevibacterium profundi Pei et al. 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Brevibacteriaceae

genus: Brevibacterium

species: Brevibacterium profundi

full scientific name: Brevibacterium profundi Pei et al. 2020

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 30

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-8(H₂)

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Deep ocean sediment in the Western Pacific Ocean (142°24' E, 11°04' N) at a depth of 7068 m
• latitude: 11.0667
• longitude: 142.4

taxonmaps

• @ref: 69479
• File name: preview.99_4584.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15817;96_81;97_619;98_713;99_4584&stattab=map
• Last taxonomy: Brevibacterium
• 16S sequence: MT874851
• Sequence Identity:
• Total samples: 2870
• soil counts: 309
• aquatic counts: 309
• animal counts: 2183
• plant counts: 69

Sequence information

16S sequences

• @ref: 67770
• description: Brevibacterium profundi strain O1 16S ribosomal RNA gene, partial sequence
• accession: MT874851
• length: 1485
• database: nuccore
• NCBI tax ID: 2761954

Genome sequences

• @ref: 67770
• description: Brevibacterium sp. 'Marine' chromosome, complete genome
• accession: GCA_012844365
• assembly level: complete
• database: ncbi
• NCBI tax ID: 2725563

GC content

• @ref: 67770
• GC-content: 64.9
• method: genome sequence analysis

External links

@ref: 67770

culture collection no.: JCM 33845, MCCC 1A16744

literature

• topic: Phylogeny
• Pubmed-ID: 32965208
• title: Brevibacterium profundi sp. nov., isolated from deep-sea sediment of the Western Pacific Ocean.
• authors: Pei S, Xie F, Niu S, Ma L, Zhang R, Zhang G
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.004483
• year: 2020
• mesh: Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genome Size, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Pacific Ocean, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
• topic2: Transcriptome

Reference