Cite the latest
BacDive paper
×

Rate our new design

Thank you!
BacDive D3
Content
Advanced search Isolation sources API ® test finder TAXplorer Statistics Special collections Download selection Web services SPARQL
About us
About Team Contact Tutorials News Mailinglist
BacDive ID 16632
Type strain
Culture col. no. DSM 45615 CCTCC AA 2011013 YIM 77521 JCM 17698
NCBI tax ID(s) 1073253
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 17767

BacDive-ID: 16632

DSM-Number: 45615

keywords: genome sequence, 16S sequence, aerobe, spore-forming, mesophilic, Gram-positive

description: Thermocatellispora tengchongensis DSM 45615 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from sandy soil from a geothermal area.

NCBI tax id

  • NCBI tax id: 1073253
  • Matching level: species

strain history

@refhistory
17767<- S.-K. Tang, YIM; YIM 77521 <- E. Zhou
67770S.-K. Tang YIM 77521.

doi: 10.13145/bacdive16632.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/actinomycetota
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Thermocatellispora
  • species: Thermocatellispora tengchongensis
  • full scientific name: Thermocatellispora tengchongensis Zhou et al. 2012

@ref: 17767

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Thermocatellispora

species: Thermocatellispora tengchongensis

full scientific name: Thermocatellispora tengchongensis Zhou et al. 2012

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
30475positiveno
125439no93.4
125439positive100

pigmentation

  • @ref: 30475
  • production: yes

multimedia

  • @ref: 17767
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45615.jpg
  • caption: Medium 553 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17767GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
17767GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
17767ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperature
17767positivegrowth37
30475positivegrowth28-58
30475positiveoptimum47.5
67770positivegrowth37

culture pH

@refabilitytypepH
30475positivegrowth06-08
30475positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
30475aerobe
125439obligate aerobe99.2

spore formation

@refspore formationconfidence
30475yes
125439yes96.7
125438yes90.594

halophily

  • @ref: 30475
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3047522599arabinose+carbon source
3047528757fructose+carbon source
3047528260galactose+carbon source
3047517716lactose+carbon source
3047517306maltose+carbon source
3047537684mannose+carbon source
3047517268myo-inositol+carbon source
3047517992sucrose+carbon source
3047517151xylitol+carbon source
3047518222xylose+carbon source
3047517632nitrate+reduction

enzymes

@refvalueactivityec
30475catalase+1.11.1.6
30475cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17767sandy soil from a geothermal areaYunnan Province, Tengchong, Rehai National ParkChinaCHNAsia
67770Sandy soil at Rehai National ParkTengchong, Yunnan Province, south-west ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Soil

Interaction and safety

risk assessment

  • @ref: 17767
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionassembly levelINSDC accessionBV-BRC accessionIMG accessionNCBI tax IDscore
66792ASM1420231v1 assembly for Thermocatellispora tengchongensis DSM 45615scaffoldGCA_0142023151073253.32861438687107325353.43
124043ASM3954300v1 assembly for Thermocatellispora tengchongensis JCM 17698scaffoldGCA_0395430051073253
124043ASM4267526v1 assembly for Thermocatellispora tengchongensis JCM 17698contigGCA_042675265107325337.03

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
17767Thermocatellispora tengchongensis strain YIM 77521 16S ribosomal RNA gene, partial sequenceJN3156661526nuccore1073253
124043Thermocatellispora tengchongensis strain YIM 77521 16S ribosomal RNA gene, partial sequence.KT884888671nuccore1073253

GC content

@refGC-contentmethod
1776773.3high performance liquid chromatography (HPLC)
3047573.3

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.2
125439BacteriaNetgram_stainReaction to gram-stainingpositive100
125439BacteriaNetmotilityAbility to perform movementno93.4
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes96.7
125438gram-positivegram-positivePositive reaction to Gram-stainingyes86.572yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.557no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.123yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes90.594yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno94.346no
125438motile2+flagellatedAbility to perform flagellated movementno88yes

Literature

@ref: 17767

culture collection no.: DSM 45615, CCTCC AA 2011013, YIM 77521, JCM 17698

straininfo link

  • @ref: 126262
  • straininfo: 400094

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22140173Thermocatellispora tengchongensis gen. nov., sp. nov., a new member of the family Streptosporangiaceae.Zhou EM, Yang LL, Song ZQ, Yu TT, Nie GX, Ming H, Zhou Y, Tang SK, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.036897-02011Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial, Vitamin K 2/analysisGenetics
Phylogeny30444470Thermocatellispora soli sp. nov., isolated from hot spring soil.Duangupama T, Pittayakhajonwut P, Thawai CInt J Syst Evol Microbiol10.1099/ijsem.0.0031152018Actinobacteria/genetics, Actinomycetales/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Hot Springs, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
34946155Steroid Metabolism in Thermophilic Actinobacterium Saccharopolyspora hirsuta VKM Ac-666T.Lobastova T, Fokina V, Tarlachkov S, Shutov A, Bragin E, Kazantsev A, Donova M.Microorganisms10.3390/microorganisms91225542021Steroids, Bioconversion, Cholate, Thermophilic Actinobacteria, Sterol Catabolism, Saccharopolyspora Hirsuta
Transcriptome36555813Insight into Different Stages of Steroid Degradation in Thermophilic Saccharopolyspora hirsuta VKM Ac-666T Strain.Lobastova T, Fokina V, Pozdnyakova-Filatova I, Tarlachkov S, Shutov A, Donova M.Int J Mol Sci10.3390/ijms2324161742022Steroid, Catabolism, Transcriptome, Thermophilic Actinobacteria, Sterol Degradation, Saccharopolyspora Hirsuta, Saccharopolyspora, Actinobacteria, Phytosterols
38095354Enzyme-Catalyzed Oxidative Degradation of Ergothioneine.Nalivaiko EY, Vasseur CM, Seebeck FP.Angew Chem Int Ed Engl10.1002/anie.2023184452024Biosynthesis, Ergothioneine, Desulfinase, Thiol Dioxygenase, Ergothioneine, Dioxygenases
38336849Natural diversity screening, assay development, and characterization of nylon-6 enzymatic depolymerization.Bell EL, Rosetto G, Ingraham MA, Ramirez KJ, Lincoln C, Clarke RW, Gado JE, Lilly JL, Kucharzyk KH, Erickson E, Beckham GT.Nat Commun10.1038/s41467-024-45523-52024analogs & derivatives, Polymers, Nylons

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17767Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45615)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45615
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30475Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2681028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer10.1093/database/baaf059StrainInfo—the central database for linked microbial strain identifiers

BacDive

About Team News Mailinglist

Help

How to cite Tutorials Contact Help

Social Media

BlueskyBluesky linkedin de.NBI Survey
DSMZ Global core biodata resource deNBI Elixis core data resource DZIF NFDI4 Biodiversity NFDI4 Microbiota
© DSMZ 2026 Imprint Privacy Statement Copyright & License License