@ref: 1468
BacDive-ID: 16643
DSM-Number: 3772
keywords: genome sequence, 16S sequence, anaerobe, hyperthermophilic
description: Acidianus ambivalens DSM 3772 is an anaerobe, hyperthermophilic prokaryote that was isolated from solfataric mud.
| @ref | history |
|---|---|
| 1468 | <- W. Zillig, Max Planck Inst. Biochem., Martinsried, Germany; LEI 10 <- W. Zillig; {1984} |
| 67770 | DSM 3772 <-- W. Zillig Lei 10. |
doi: 10.13145/bacdive16643.20251217.10
@ref: 1468
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Acidianus
species: Acidianus ambivalens
full scientific name: Acidianus ambivalens (Zillig and Böck 1987) Fuchs et al. 1996
type strain: yes
| @ref | growth | type | temperature |
|---|---|---|---|
| 1468 | positive | growth | 80 |
| 67770 | positive | growth | 80 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 1468 | anaerobe | |
| 125439 | anaerobe | 92.4 |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 1468 | solfataric mud | Leihnukur fissure | Iceland | ISL | Europe |
| 67770 | Solfataric waterhole at Leirhukur fissure | Iceland | ISL | Europe |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Terrestrial | #Volcanic |
| @ref | description | assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | score |
|---|---|---|---|---|---|---|---|
| 67770 | ASM972901v1 assembly for Acidianus ambivalens LEI 10 | complete | GCA_009729015 | 2283.11 | 8065311606 | 2283 | 97.04 |
| 67770 | ASM942888v1 assembly for Acidianus ambivalens DSM 3772 | contig | GCA_009428885 | 2283.10 | 8065314359 | 2283 | 64.2 |
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | D.ambivalens DNA for 16S ribosomal RNA gene | X90484 | 1422 | nuccore | 2283 |
| 1468 | Acidianus ambivalens 16S rRNA gene, almost full-length sequence | D85506 | 1462 | nuccore | 2283 |
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 64.9 |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 66.6 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 83.8 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 92.4 |
@ref: 1468
culture collection no.: DSM 3772, JCM 9191, LEI 10
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 1522063 | Molecular characterization of the sor gene, which encodes the sulfur oxygenase/reductase of the thermoacidophilic Archaeum Desulfurolobus ambivalens. | Kletzin A. | J Bacteriol | 10.1128/jb.174.18.5854-5859.1992 | 1992 | genetics, metabolism, genetics, Archaeal Proteins, Gene Expression Regulation, Bacterial, genetics | |
| Enzymology | 2493451 | Coupled enzymatic production of sulfite, thiosulfate, and hydrogen sulfide from sulfur: purification and properties of a sulfur oxygenase reductase from the facultatively anaerobic archaebacterium Desulfurolobus ambivalens. | Kletzin A | J Bacteriol | 10.1128/jb.171.3.1638-1643.1989 | 1989 | Archaea/*enzymology, *Archaeal Proteins, Bacteria/*enzymology, Bacteria, Anaerobic/enzymology, Hydrogen Sulfide/analysis, Kinetics, Oxidoreductases/*isolation & purification/metabolism, Oxidoreductases Acting on Sulfur Group Donors, Sulfites/analysis, Thermodynamics, Thiosulfates/analysis | Biotechnology |
| Genetics | 7851403 | A seven-iron ferredoxin from the thermoacidophilic archaeon Desulfurolobus ambivalens. | Teixeira M, Batista R, Campos AP, Gomes C, Mendes J, Pacheco I, Anemuller S, Hagen WR | Eur J Biochem | 10.1111/j.1432-1033.1995.tb20392.x | 1995 | Amino Acid Sequence, Amino Acids/analysis, Archaea/*chemistry, Electron Spin Resonance Spectroscopy, Ferredoxins/*chemistry/isolation & purification/physiology, Iron/*analysis, Molecular Sequence Data, Sequence Homology, Amino Acid, Spectrophotometry, Ultraviolet | Enzymology |
| Enzymology | 9023221 | The terminal quinol oxidase of the hyperthermophilic archaeon Acidianus ambivalens exhibits a novel subunit structure and gene organization. | Purschke WG, Schmidt CL, Petersen A, Schafer G | J Bacteriol | 10.1128/jb.179.4.1344-1353.1997 | 1997 | Amino Acid Sequence, Chromosome Mapping, Cloning, Molecular, *Genes, Bacterial, Molecular Sequence Data, Multigene Family, Open Reading Frames, *Operon, Oxidation-Reduction, Oxidoreductases/*chemistry/*genetics/isolation & purification/metabolism, Phylogeny, Point Mutation, Protein Conformation, Protein Structure, Secondary, RNA, Bacterial/genetics, RNA, Messenger/genetics, Sequence Alignment, Sulfolobaceae/*enzymology/genetics, Thiophenes/metabolism, Transcription, Genetic | Phylogeny |
| 10430561 | Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea. | Kletzin A, Lieke A, Urich T, Charlebois RL, Sensen CW. | Genetics | 10.1093/genetics/152.4.1307 | 1999 | genetics, genetics | ||
| Enzymology | 10543443 | Functional characterization of an extremely thermophilic ATPase in membranes of the crenarchaeon Acidianus ambivalens. | Hinrichs M, Schafer G, Anemuller S | Biol Chem | 10.1515/BC.1999.132 | 1999 | Adenosine Triphosphatases/*metabolism, Archaea/*enzymology, Catalysis, Cations, Divalent, Cell Membrane/enzymology, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Substrate Specificity | Metabolism |
| Metabolism | 12775213 | Protein-protein, protein-RNA and protein-lipid interactions of signal-recognition particle components in the hyperthermoacidophilic archaeon Acidianus ambivalens. | Moll RG. | Biochem J | 10.1042/bj20030475 | 2003 | metabolism, metabolism, genetics, metabolism, metabolism, genetics, Lipid Metabolism | |
| Metabolism | 15030315 | The sulphur oxygenase reductase from Acidianus ambivalens is a multimeric protein containing a low-potential mononuclear non-haem iron centre. | Urich T, Bandeiras TM, Leal SS, Rachel R, Albrecht T, Zimmermann P, Scholz C, Teixeira M, Gomes CM, Kletzin A. | Biochem J | 10.1042/bj20040003 | 2004 | metabolism, Heme, chemistry, chemistry | |
| 16535556 | Organic solutes in hyperthermophilic archaea. | Martins LO, Huber R, Huber H, Stetter KO, Da Costa MS, Santos H. | Appl Environ Microbiol | 10.1128/aem.63.3.896-902.1997 | 1997 | |||
| Metabolism | 21747790 | An Extracellular Tetrathionate Hydrolase from the Thermoacidophilic Archaeon Acidianus Ambivalens with an Activity Optimum at pH 1. | Protze J, Muller F, Lauber K, Nass B, Mentele R, Lottspeich F, Kletzin A. | Front Microbiol | 10.3389/fmicb.2011.00068 | 2011 | Archaea, Surface layer, sulfur metabolism, S4 Intermediate Pathway, Disproportionation, Tetrathionate Hydrolase | |
| Phylogeny | 24031663 | A novel acidophilic, thermophilic iron and sulfur-oxidizing archaeon isolated from a hot spring of tengchong, yunnan, China. | Ding J, Zhang R, Yu Y, Jin D, Liang C, Yi Y, Zhu W, Xia J. | Braz J Microbiol | 10.1590/s1517-838220110002000016 | 2011 | Isolation, Identification, Bioleaching, Acidianus Manzaensis | |
| Metabolism | 24352732 | Microbial alkyl- and aryl-sulfatases: mechanism, occurrence, screening and stereoselectivities. | Toesch M, Schober M, Faber K. | Appl Microbiol Biotechnol | 10.1007/s00253-013-5438-0 | 2014 | metabolism, chemistry | |
| Metabolism | 27857710 | The Two-Component System RsrS-RsrR Regulates the Tetrathionate Intermediate Pathway for Thiosulfate Oxidation in Acidithiobacillus caldus. | Wang ZB, Li YQ, Lin JQ, Pang X, Liu XM, Liu BQ, Wang R, Zhang CJ, Wu Y, Lin JQ, Chen LX. | Front Microbiol | 10.3389/fmicb.2016.01755 | 2016 | Transcriptional regulation, two-component system, sulfur metabolism, Thiosulfate Oxidation, Acidithiobacillus Caldus, Rsrs-rsrr, S4i Pathway, Cis Regulatory Element | |
| 30687275 | Sulfur Oxidation in the Acidophilic Autotrophic Acidithiobacillus spp. | Wang R, Lin JQ, Liu XM, Pang X, Zhang CJ, Yang CL, Gao XY, Lin CM, Li YQ, Li Y, Lin JQ, Chen LX. | Front Microbiol | 10.3389/fmicb.2018.03290 | 2018 | two-component system, Sulfite Oxidation, Sulfide Oxidation, Sulfur Oxidation, Acidithiobacillus, Elemental Sulfur Oxidation, Thiosulfate Oxidation Pathways | ||
| Genetics | 31948968 | Draft Genome Sequence of Acidianus ambivalens DSM 3772, an Aerobic Thermoacidophilic Sulfur Disproportionator. | Bertran E, Ward LM, Johnston DT | Microbiol Resour Announc | 10.1128/MRA.01415-19 | 2020 | ||
| 32165389 | Genome Sequences of Five Type Strain Members of the Archaeal Family Sulfolobaceae, Acidianus ambivalens, Acidianus infernus, Stygiolobus azoricus, Sulfuracidifex metallicus, and Sulfurisphaera ohwakuensis. | Counts JA, Vitko NP, Kelly RM. | Microbiol Resour Announc | 10.1128/mra.01490-19 | 2020 | |||
| Enzymology | 32218776 | Enzymes Catalyzing Crotonyl-CoA Conversion to Acetoacetyl-CoA During the Autotrophic CO2 Fixation in Metallosphaera sedula. | Liu L, Huber H, Berg IA. | Front Microbiol | 10.3389/fmicb.2020.00354 | 2020 | Sulfolobales, Metallosphaera Sedula, 3-Hydroxypropionate/4-hydroxybutyrate Cycle, 3-Hydroxybutyryl-coa Dehydrogenase, Crotonyl-coa Hydratase | |
| 34587356 | Highly integrated adaptive mechanisms in Spiribacter halalkaliphilus, a bacterium abundant in Chinese soda-saline lakes. | Xue Q, Zhao D, Zhang S, Zhou H, Zuo Z, Zhou J, Li M, Xiang H. | Environ Microbiol | 10.1111/1462-2920.15794 | 2021 | Bacteria, Lakes | ||
| Metabolism | 38348185 | Tetrathionate hydrolase from the acidophilic microorganisms. | Kanao T. | Front Microbiol | 10.3389/fmicb.2024.1338669 | 2024 | Acidophiles, Chemoautotroph, Tetrathionate Hydrolase, Dissimilatory Sulfur Metabolism, Reduced Inorganic Sulfur Compounds, S4-intermediate Pathway | |
| Genetics | 38953360 | Phenotype-driven assessment of the ancestral trajectory of sulfur biooxidation in the thermoacidophilic archaea Sulfolobaceae. | Willard DJ, H Manesh MJ, Bing RG, Alexander BH, Kelly RM. | mBio | 10.1128/mbio.01033-24 | 2024 | Sulfur, Archaea, Genomes, Chemolithotrophy, Thermoacidophile, Sulfolobaceae, Sulfur, Oxidation-Reduction |
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1468 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3772) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3772 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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