@ref: 8484
BacDive-ID: 1690
DSM-Number: 20215
keywords: 16S sequence, anaerobe, mesophilic
description: Bifidobacterium bifidum Hl 3 is an anaerobe, mesophilic prokaryote that was isolated from intestine of adult.
| NCBI tax id | Matching level |
|---|---|
| 398515 | strain |
| 1681 | species |
doi: 10.13145/bacdive1690.20251217.10
| @ref | synonym |
|---|---|
| 20215 | Bacillus bifidus |
| 20215 | Bacterium bifidum |
@ref: 8484
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium bifidum
full scientific name: Bifidobacterium bifidum (Tissier 1900) Orla-Jensen 1924 emend. Nouioui et al. 2018
strain designation: Hl 3
type strain: no
| @ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
|---|---|---|---|---|
| 68371 | Potassium 5-ketogluconate | - | builds acid from | |
| 68371 | amygdalin | - | builds acid from | 27613 |
| 68371 | arbutin | - | builds acid from | 18305 |
| 68371 | N-acetylglucosamine | - | builds acid from | 59640 |
| 68371 | D-galactose | - | builds acid from | 12936 |
| 68371 | glycerol | - | builds acid from | 17754 |
| 68371 | erythritol | - | builds acid from | 17113 |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | |
| 68371 | gluconate | - | builds acid from | 24265 |
| 68371 | L-arabitol | - | builds acid from | 18403 |
| 68371 | D-arabitol | - | builds acid from | 18333 |
| 68371 | L-fucose | - | builds acid from | 18287 |
| 68371 | D-fucose | - | builds acid from | 28847 |
| 68371 | D-tagatose | - | builds acid from | 16443 |
| 68371 | D-lyxose | - | builds acid from | 62318 |
| 68371 | turanose | - | builds acid from | 32528 |
| 68371 | xylitol | - | builds acid from | 17151 |
| 68371 | glycogen | - | builds acid from | 28087 |
| 68371 | starch | - | builds acid from | 28017 |
| 68371 | raffinose | - | builds acid from | 16634 |
| 68371 | melezitose | - | builds acid from | 6731 |
| 68371 | inulin | - | builds acid from | 15443 |
| 68371 | trehalose | - | builds acid from | 27082 |
| 68371 | sucrose | - | builds acid from | 17992 |
| 68371 | melibiose | - | builds acid from | 28053 |
| 68371 | lactose | + | builds acid from | 17716 |
| 68371 | maltose | - | builds acid from | 17306 |
| 68371 | cellobiose | - | builds acid from | 17057 |
| 68371 | salicin | - | builds acid from | 17814 |
| 68371 | esculin | - | builds acid from | 4853 |
| 68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
| 68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
| 68371 | D-sorbitol | - | builds acid from | 17924 |
| 68371 | D-mannitol | - | builds acid from | 16899 |
| 68371 | myo-inositol | - | builds acid from | 17268 |
| 68371 | galactitol | - | builds acid from | 16813 |
| 68371 | L-rhamnose | - | builds acid from | 62345 |
| 68371 | L-sorbose | - | builds acid from | 17266 |
| 68371 | D-mannose | - | builds acid from | 16024 |
| 68371 | D-fructose | + | builds acid from | 15824 |
| 68371 | D-glucose | + | builds acid from | 17634 |
| 68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
| 68371 | ribitol | - | builds acid from | 15963 |
| 68371 | L-xylose | - | builds acid from | 65328 |
| 68371 | D-xylose | - | builds acid from | 65327 |
| 68371 | D-ribose | - | builds acid from | 16988 |
| 68371 | L-arabinose | - | builds acid from | 30849 |
| 68371 | D-arabinose | - | builds acid from | 17108 |
| @ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8484 | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - |
@ref: 8484
culture collection no.: DSM 20215
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 3595606 | 'Lipoteichoic acid' of Bifidobacterium bifidum subspecies pennsylvanicum DSM 20239. A lipoglycan with monoglycerophosphate side chains. | Fischer W. | Eur J Biochem | 10.1111/j.1432-1033.1987.tb11488.x | 1987 | analysis, Lipopolysaccharides, isolation & purification, isolation & purification, isolation & purification | Phylogeny |
| Enzymology | 11319112 | Intra- and extracellular beta-galactosidases from Bifidobacterium bifidum and B. infantis: molecular cloning, heterologous expression, and comparative characterization. | Moller PL, Jorgensen F, Hansen OC, Madsen SM, Stougaard P | Appl Environ Microbiol | 10.1128/AEM.67.5.2276-2283.2001 | 2001 | Amino Acid Sequence, Bifidobacterium/classification/*enzymology/genetics, Binding Sites/genetics, Escherichia coli/enzymology/genetics, Genes, Bacterial, Molecular Sequence Data, Recombinant Proteins/metabolism, Sequence Analysis, DNA, Substrate Specificity, *beta-Galactosidase/chemistry/genetics/isolation & purification/metabolism | Phylogeny |
| Metabolism | 11778873 | High-efficiency synthesis of oligosaccharides with a truncated beta-galactosidase from Bifidobacterium bifidum. | Jorgensen F, Hansen OC, Stougaard P | Appl Microbiol Biotechnol | 10.1007/s00253-001-0845-z | 2001 | Bifidobacterium/*enzymology/genetics, Biotechnology, Escherichia coli/genetics, Hydrolysis, Lactose/metabolism, Molecular Weight, Oligosaccharides/*biosynthesis, Recombinant Proteins/chemistry/genetics/metabolism, Sequence Deletion, beta-Galactosidase/chemistry/genetics/*metabolism | Biotechnology |
| Enzymology | 17684740 | Molecular cloning and comparative analysis of four beta-galactosidase genes from Bifidobacterium bifidum NCIMB41171. | Goulas TK, Goulas AK, Tzortzis G, Gibson GR | Appl Microbiol Biotechnol | 10.1007/s00253-007-1099-1 | 2007 | Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Bifidobacterium/*enzymology/*genetics, Cloning, Molecular, Gene Expression Regulation, Bacterial, Protein Structure, Tertiary, beta-Galactosidase/chemistry/*genetics/metabolism | Metabolism |
| 25387230 | The impact of the milk glycobiome on the neonate gut microbiota. | Pacheco AR, Barile D, Underwood MA, Mills DA. | Annu Rev Anim Biosci | 10.1146/annurev-animal-022114-111112 | 2015 | Bifidobacteria, Milk Oligosaccharides, Glycobiome, Milk Bioactives, Neonatal Microbiota, microbiology, chemistry, chemistry, chemistry, chemistry, chemistry | ||
| 25473598 | Biochemical characterization of mutants in the active site residues of the beta-galactosidase enzyme of Bacillus circulans ATCC 31382. | Bultema JB, Kuipers BJ, Dijkhuizen L. | FEBS Open Bio | 10.1016/j.fob.2014.11.002 | 2014 | Mutagenesis, Galacto-oligosaccharides, Bacillus circulans, Sd, Standard Deviation, Pcr, Polymerase Chain Reaction, Dna, Deoxyribonucleic Acid, Gos, Galacto-oligosaccharides, Gh2, Glycoside Hydrolase Family 2, Tm, Melting Temperatures, Catalytic Residue, Transglycosylation Activity | ||
| Metabolism | 27782805 | Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense. | Bunesova V, Lacroix C, Schwab C. | BMC Microbiol | 10.1186/s12866-016-0867-4 | 2016 | Bifidobacterium, Hmos, L-fucose, Fucosyllactose, 1,2 Propanediol, metabolism, metabolism, metabolism, metabolism, metabolism | |
| 28194144 | Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation. | Schwab C, Ruscheweyh HJ, Bunesova V, Pham VT, Beerenwinkel N, Lacroix C. | Front Microbiol | 10.3389/fmicb.2017.00095 | 2017 | Bifidobacterium, Fucose, Trophic Interactions, Fucosyllactose, Eubacterium Hallii | ||
| Enzymology | 28538097 | Biochemical Characterization of the Functional Roles of Residues in the Active Site of the beta-Galactosidase from Bacillus circulans ATCC 31382. | Yin H, Pijning T, Meng X, Dijkhuizen L, van Leeuwen SS. | Biochemistry | 10.1021/acs.biochem.7b00207 | 2017 | enzymology, chemistry, Catalytic Domain | |
| 30661116 | Characterization of GH2 and GH42 beta-galactosidases derived from bifidobacterial infant isolates. | Ambrogi V, Bottacini F, O'Sullivan J, O'Connell Motherway M, Linqiu C, Schoemaker B, Schoterman M, van Sinderen D. | AMB Express | 10.1186/s13568-019-0735-3 | 2019 | Lactose, Bifidobacteria, Hmos, Infant Gut Microbiota | ||
| Metabolism | 30919101 | The antioxidant and prebiotic properties of lactobionic acid. | Goderska K | Appl Microbiol Biotechnol | 10.1007/s00253-019-09754-7 | 2019 | Antioxidants/*chemistry/*metabolism, Disaccharides/*chemistry/*metabolism, Hot Temperature, Lactobacillus fermentum/growth & development/metabolism, Oxidation-Reduction, Peroxides/chemistry, Prebiotics/*analysis, Pseudomonas/*metabolism, Rapeseed Oil/chemistry, Whey/metabolism/*microbiology, Whey Proteins/metabolism | Stress |
| 39598789 | Quantitative Analysis of Lactobionic Acid in Bioreactor Cultures and Selected Biological Activities. | Goderska K, Juzwa W, Karpinski TM. | Molecules | 10.3390/molecules29225400 | 2024 | Bifidobacterium, Lactose, Flow cytometry, Whey, in vitro model, Prebiotic, Lactobionic Acid, Pseudomonas Taetrolens, Pseudomonas, Disaccharides, Lactose, Bioreactors |
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8484 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20215) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20215 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 68371 | Automatically annotated from API 50CH acid | |||||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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