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BacDive ID 172328
Type strain
Strain Designation 96-1243
Culture col. no. CIP 105213 96-1243
NCBI tax ID(s) 562
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 118354

BacDive-ID: 172328

keywords: facultative anaerobe, Gram-negative, motile, rod-shaped

description: Escherichia coli 96-1243 is a facultative anaerobe, Gram-negative, motile prokaryote that was isolated from Human, Stool.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 118354
  • history: CIP <- 1997, D.L. Woodward, Lab. Dis. Control, Ottawa, Canada: strain 96-1243

doi: 10.13145/bacdive172328.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/pseudomonadati
  • keyword: phylum/pseudomonadota
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 118354

domain: Bacteria

phylum: Pseudomonadota

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: 96-1243

type strain: no

Morphology

cell morphology

  • @ref: 118354
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 118354
  • hemolysis ability: 1

Culture and growth conditions

culture medium

  • @ref: 118354
  • name: CIP Medium 3
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

  • @ref: 118354
  • growth: positive
  • type: growth
  • temperature: 5-41

Physiology and metabolism

oxygen tolerance

  • @ref: 118354
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 118354
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11835429864mannitol+fermentation
11835416947citrate-carbon source
1183544853esculin-hydrolysis
11835417234glucose+fermentation
11835417716lactose+fermentation
11835417632nitrate+reduction
11835416301nitrite+reduction
11835415792malonate-assimilation
118354132112sodium thiosulfate-builds gas from
11835417234glucose+degradation

antibiotic resistance

  • @ref: 118354
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 118354
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11835415688acetoin-
11835417234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
118354oxidase-
118354beta-galactosidase+3.2.1.23
118354alcohol dehydrogenase-1.1.1.1
118354gelatinase-
118354catalase+1.11.1.6
118354lysine decarboxylase+4.1.1.18
118354ornithine decarboxylase+4.1.1.17
118354phenylalanine ammonia-lyase-4.3.1.24
118354tryptophan deaminase-
118354urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118354-++--+----++-+-+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118354+++++++++++++++-+--+++-++----+-+-+--+--+---++--+++----++---++----++-++-----+---++-----+--++++++-+-+

Isolation, sampling and environmental information

isolation

  • @ref: 118354
  • sample type: Human, Stool
  • geographic location: Prince Edward Island
  • country: Canada
  • origin.country: CAN
  • continent: North America
  • isolation date: 1996

Interaction and safety

risk assessment

  • @ref: 118354
  • biosafety level: 3
  • biosafety level comment: Risk group (French classification)

Literature

@ref: 118354

culture collection no.: CIP 105213

straininfo link

  • @ref: 126262
  • straininfo: 68534

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68382Automatically annotated from API zym
118354Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105213Collection of Institut Pasteur (CIP 105213)
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059