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BacDive ID 172415
Type strain
Culture col. no. CRBIP19.176
NCBI tax ID(s) 562
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 118447

BacDive-ID: 172415

keywords: mesophilic, Gram-negative, rod-shaped

description: Escherichia coli CRBIP19.176 is a mesophilic, Gram-negative, rod-shaped prokaryote of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 118447
  • history: CIP <- 2007, JM. Ghigo, Institut Pasteur, Paris, France: strain E.coli.536evg <- J. Hacker

doi: 10.13145/bacdive172415.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/pseudomonadati
  • keyword: phylum/pseudomonadota
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 118447

domain: Bacteria

phylum: Pseudomonadota

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

type strain: no

Morphology

cell morphology

  • @ref: 118447
  • gram stain: negative
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlink
118447Luria-Bertani Mediumyes
118447CIP Medium 368yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=368

culture temp

  • @ref: 118447
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371L-fucose+builds acid from18287
68371D-arabitol-builds acid from18333
68371L-arabitol-builds acid from18403
68371turanose-builds acid from32528
68371D-lyxose-builds acid from62318
68371D-tagatose+builds acid from16443
68371sucrose+builds acid from17992
68371trehalose+builds acid from27082
68371inulin-builds acid from15443
68371melezitose-builds acid from6731
68371raffinose+builds acid from16634
68371starch-builds acid from28017
68371glycogen-builds acid from28087
68371xylitol-builds acid from17151
68371gentiobiose-builds acid from28066
68371cellobiose-builds acid from17057
68371maltose+builds acid from17306
68371lactose+builds acid from17716
68371amygdalin-builds acid from27613
68371methyl alpha-D-mannoside-builds acid from43943
68371D-fructose+builds acid from15824
68371D-mannose+builds acid from16024
68371L-sorbose+builds acid from17266
68371L-rhamnose+builds acid from62345
68371galactitol-builds acid from16813
68371myo-inositol-builds acid from17268
68371D-mannitol+builds acid from16899
68371D-xylose+builds acid from65327
68371L-xylose-builds acid from65328
68371ribitol-builds acid from15963
68371methyl beta-D-xylopyranoside-builds acid from74863
68371D-arabinose-builds acid from17108
68371L-arabinose+builds acid from30849
68371glycerol+builds acid from17754
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371D-fucose-builds acid from28847
68371melibiose+builds acid from28053
68371esculin+builds acid from4853
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371D-sorbitol+builds acid from17924
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371D-ribose+builds acid from16988
68371erythritol-builds acid from17113
68368nitrate-reduction17632
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-glucose-fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea-hydrolysis16199
68368citrate-assimilation16947
68368ornithine-degradation18257
68368lysine-degradation25094
68368arginine-hydrolysis29016

metabolite production

@refChebi-IDmetaboliteproduction
6836816136hydrogen sulfideno
6836835581indoleno
6836815688acetoinno
6836816301nitriteno
6836817997dinitrogenno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUINOSorRHASACMELNO2N2
118447-------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118447+--+++---++++++--++--+-+/-++/--+++++--+------+-+--+-+

Interaction and safety

risk assessment

  • @ref: 118447
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Literature

@ref: 118447

culture collection no.: CRBIP19.176

straininfo link

  • @ref: 126262
  • straininfo: 372667

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
118447Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP19.176Collection of Institut Pasteur (CRBIP19.176)
126262A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. ReimerStrainInfo—the central database for linked microbial strain identifiers10.1093/database/baaf059

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