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| The Association of the Oral Microbiota with the Effects of Acid Stress Induced by an Increase of Brain Lactate in Schizophrenia Patients. | Krzysciak W, Karcz P, Bystrowska B, Szwajca M, Bryll A, Smierciak N, Ligezka A, Turek A, Kozicz T, Skalniak AE, Jagielski P, Popiela TJ, Pilecki M. | Biomedicines | 2023 | Schizophrenia, Oral Microbiota, Brain Lactate | | 36830777 | 10.3390/biomedicines11020240 | |
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| Altered oral microbiome in Sudanese Toombak smokeless tobacco users carries a newly emerging risk of squamous cell carcinoma development and progression. | Sami A, Elimairi I, Ryan CA, Stanton C, Patangia D, Ross RP. | Sci Rep | 2023 | Tobacco, Smokeless, Carcinoma, Squamous Cell, Mouth Neoplasms, Precancerous Conditions, Microbiota | | 37095112 | 10.1038/s41598-023-32892-y | |
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| Diversity, composition, and networking of saliva microbiota distinguish the severity of COVID-19 episodes as revealed by an analysis of 16S rRNA variable V1-V3 region sequences. | Larios Serrato V, Meza B, Gonzalez-Torres C, Gaytan-Cervantes J, Gonzalez Ibarra J, Santacruz Tinoco CE, Anguiano Hernandez YM, Martinez Miguel B, Cazarez Cortazar A, Sarquiz Martinez B, Alvarado Yaah JE, Mendoza Perez AR, Palma Herrera JJ, Garcia Soto LM, Chavez Rojas AI, Bravo Mateos G, Samano Marquez G, Grajales Muniz C, Torres J. | mSystems | 2023 | Microbiota, Disease severity, Viral Infections, Microbial Networks, Covid-19, Microbiota, COVID-19 | | 37310423 | 10.1128/msystems.01062-22 | |
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| Distinctive features of the oropharyngeal microbiome in Inuit of Nunavik and correlations of mild to moderate bronchial obstruction with dysbiosis. | Flahaut M, Leprohon P, Pham NP, Gingras H, Bourbeau J, Papadopoulou B, Maltais F, Ouellette M. | Sci Rep | 2023 | Oropharynx, Bronchial Diseases, Microbiota, Dysbiosis | | 37789055 | 10.1038/s41598-023-43821-4 | |
| Loss of Airway Phylogenetic Diversity Is Associated with Clinical and Pathobiological Markers of Disease Development in Chronic Obstructive Pulmonary Disease. | Opron K, Begley LA, Erb-Downward JR, Li G, Alexis NE, Barjaktarevic I, Barr RG, Bleecker ER, Boucher R, Bowler RP, Christenson SA, Comellas AP, Criner G, Cooper CB, Couper D, Galban CJ, Han MK, Hastie A, Hatt C, Hoffman EA, Kaner RJ, Kesimer M, Krishnan JA, LaFon DC, Martinez FJ, Ortega VE, Peters SP, Paine R, Putcha N, Woodruff PG, Huffnagle GB, Kozik AJ, Curtis JL, Huang YJ, SPIROMICS Investigators. | Am J Respir Crit Care Med | 2024 | Mucin, Microbiota, Lung function, Sputum, Microbiome, Sputum, Pulmonary Disease, Chronic Obstructive, Microbiota | | 38261629 | 10.1164/rccm.202303-0489oc | |
| Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity. | Raju SC, Molinaro A, Awoyemi A, Jorgensen SF, Braadland PR, Nendl A, Seljeflot I, Ueland PM, McCann A, Aukrust P, Vestad B, Mayerhofer C, Broch K, Gullestad L, Lappegard KT, Halvorsen B, Kristiansen K, Hov JR, Troseid M. | Genome Med | 2024 | Inflammation, Heart Failure, Gut Microbiota, Imidazole Propionate, Heart Failure, Microbiota | Pathogenicity | 38331891 | 10.1186/s13073-024-01296-6 | |
| Detailed Characterization of the Lung-Gut Microbiome Axis Reveals the Link between PD-L1 and the Microbiome in Non-Small-Cell Lung Cancer Patients. | Ankudavicius V, Nikitina D, Lukosevicius R, Tilinde D, Salteniene V, Poskiene L, Miliauskas S, Skieceviciene J, Zemaitis M, Kupcinskas J. | Int J Mol Sci | 2024 | Lung cancer, Microbiota, PD-L1, Lung, Carcinoma, Non-Small-Cell Lung, Lung Neoplasms, Gastrointestinal Microbiome | | 38396998 | 10.3390/ijms25042323 | |
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| Effect of gut microbiome modulation on muscle function and cognition: the PROMOTe randomised controlled trial. | Ni Lochlainn M, Bowyer RCE, Moll JM, Garcia MP, Wadge S, Baleanu AF, Nessa A, Sheedy A, Akdag G, Hart D, Raffaele G, Seed PT, Murphy C, Harridge SDR, Welch AA, Greig C, Whelan K, Steves CJ. | Nat Commun | 2024 | Muscular Diseases, Gastrointestinal Microbiome | | 38424099 | 10.1038/s41467-024-46116-y | |
| An optimized culturomics strategy for isolation of human milk microbiota. | Wang F, Yu L, Ren Y, Zhang Q, He S, Zhao M, He Z, Gao Q, Chen J. | Front Microbiol | 2024 | Breast milk, Culturomics, Blood Culture Bottles, Human Milk Microbiota, Microbial Repertoire | | 38495514 | 10.3389/fmicb.2024.1272062 | |
| Detection of pulmonary actinomycosis by metagenomic next-generation sequencing in a cancer patient receiving maintenance olaparib: A review and case report. | Ni L, Wu Z, Huang J. | Respir Med Case Rep | 2024 | Cancer, Pulmonary infection, Actinomyces Odontolyticus, Metagenomic Next-generation Sequencing | | 38550310 | 10.1016/j.rmcr.2024.102007 | |
| Oral-gut microbial transmission promotes diabetic coronary heart disease. | Li Y, Liu Y, Cui J, Zhu M, Wang W, Chen K, Huang L, Liu Y. | Cardiovasc Diabetol | 2024 | Fusobacterium nucleatum, Oral Microbiota, Oral-Gut Axis, Diabetic Coronary Heart Disease, Diabetes Mellitus, Coronary Artery Disease, Gastrointestinal Microbiome | | 38581039 | 10.1186/s12933-024-02217-y | |
| Characterization of tongue coating microbiome from patients with colorectal cancer. | Chen Q, Huang X, Zhang H, Jiang X, Zeng X, Li W, Su H, Chen Y, Lin F, Li M, Gu X, Jin H, Wang R, Diao D, Wang W, Li J, Wei S, Zhang W, Liu W, Huang Z, Deng Y, Luo W, Liu Z, Zhang B. | J Oral Microbiol | 2024 | Colorectal Cancer, Microbiome, Tongue Coating, Metagenomic Shotgun Sequencing, Fur-types | | 38686186 | 10.1080/20002297.2024.2344278 | |
| Oral microbiota transplantation for intra-oral halitosis: a feasibility analysis based on an oral microbiota colonization trial in Wistar rats. | Huang Z, Cheng Y. | BMC Microbiol | 2024 | Oral Flora, Microbiota Transplantation, Intra-oral Halitosis, 16Srrna Gene Sequencing, Picrust Metabolic Analysis, Flora Imbalance, Mouth, Saliva, Rats, Wistar, Halitosis, Feasibility Studies, Microbiota | Phylogeny | 38760711 | 10.1186/s12866-024-03322-4 | |
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| Non-invasive early detection on esophageal squamous cell carcinoma and precancerous lesions by microbial biomarkers combining epidemiological factors in China. | Li M, Shao D, Fan Z, Qin J, Xu J, Huang Q, Li X, Hua Z, Li J, Hao C, Wei W, Abnet CC. | J Gastroenterol | 2024 | Microbiota, Esophageal cancer, Precancerous lesions, Early Detection, Metagenomic Sequencing, Esophageal Neoplasms, Precancerous Conditions, Early Detection of Cancer, Esophageal Squamous Cell Carcinoma | | 38819499 | 10.1007/s00535-024-02117-8 | |
| The diagnostic value of bronchoalveolar lavage fluid metagenomic next-generation sequencing in critically ill patients with respiratory tract infections. | Hu X, Jiang L, Liu X, Chang H, Dong H, Yan J, Zhou X, Kong M. | Microbiol Spectr | 2024 | Severe pneumonia, Respiratory Tract Infections, Bronchoalveolar lavage fluid, Metagenomic Next-generation Sequencing, Conventional Microbiological Tests, Bronchoalveolar Lavage Fluid, Bacteria, Respiratory Tract Infections, Critical Illness, Metagenomics, High-Throughput Nucleotide Sequencing | Genetics | 38916357 | 10.1128/spectrum.00458-24 | |
| Chlorhexidine digluconate mouthwash alters the oral microbial composition and affects the prevalence of antimicrobial resistance genes. | Bartsch S, Kohnert E, Kreutz C, Woelber JP, Anderson A, Burkhardt AS, Hellwig E, Buchalla W, Hiller KA, Ratka-Krueger P, Cieplik F, Al-Ahmad A. | Front Microbiol | 2024 | Antibiotics, Tetracycline, Cross-resistance, Efflux pump, Streptococci, metagenome, Caries, Chlorhexidine | Genetics | 38983634 | 10.3389/fmicb.2024.1429692 | |
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| Active herpesviruses are associated with intensive care unit (ICU) admission in patients pulmonary infection and alter the respiratory microbiome. | Liu Z, Qi CJ, Shi Y, Li T, Fang Y, Zhang Q. | Front Microbiol | 2024 | Pulmonary infection, metagenome, Herpesviruses, Icu Patients, Respiratory Microbiome | Genetics | 39184027 | 10.3389/fmicb.2024.1441476 | |
| Genetic Patterns of Oral Cavity Microbiome in Patients with Sickle Cell Disease. | Al-Sarraj F, Albiheyri R, Qari M, Alotaibi M, Al-Zahrani M, Anwar Y, Alghamdi MA, Nass NM, Bouback T, Alotibi I, Radhwi O, Sajer BH, Redhwan A, Al-Matary MA, Almanzalawi EA, Elshafie HS. | Int J Mol Sci | 2024 | Next-generation Sequencing, Metagenomics, Sickle Cell Anemia, Systemic Diseases, Mouth, Saliva, Anemia, Sickle Cell, RNA, Ribosomal, 16S, Microbiota | Genetics | 39201258 | 10.3390/ijms25168570 | Phylogeny |
| Gut microbiome influences efficacy of Endostatin combined with PD-1 blockade against colorectal cancer. | Xu J, Tian Y, Zhao B, Hu D, Wu S, Ma J, Yang L. | Mol Biomed | 2024 | Cancer therapy, Anti-angiogenic Therapy, Gut Microbes, Pd-1 Blockade, Adenovirus Encoding Human Endostatin, Colorectal Neoplasms, Endostatins, Programmed Cell Death 1 Receptor, Gastrointestinal Microbiome, Immune Checkpoint Inhibitors | | 39251538 | 10.1186/s43556-024-00200-3 | |
| Functional metagenomics highlights varied infection states with dynamics of pathogens and antibiotic resistance in lower respiratory tract infections. | Shamim U, Yadav A, Maurya R, Devi P, Kumari P, Kanika, Khare K, Tarai B, Pandey R. | Heliyon | 2024 | Microbes, Pneumonia, Antimicrobial Resistance (Amr), Lower Respiratory Tract Infection (Lrti), Metagenomic Next-generation Sequencing (Mngs), Czid Seq, Explify, Rpip | | 39416816 | 10.1016/j.heliyon.2024.e38380 | |
| SARS-CoV-2 infection elucidates features of pregnancy-specific immunity. | Oh DS, Kim E, Normand R, Lu G, Shook LL, Lyall A, Jasset O, Demidkin S, Gilbert E, Kim J, Akinwunmi B, Tantivit J, Tirard A, Arnold BY, Slowikowski K, MGH COVID-19 Collection & Processing Team, Goldberg MB, Filbin MR, Hacohen N, Nguyen LH, Chan AT, Yu XG, Li JZ, Yonker L, Fasano A, Perlis RH, Pasternak O, Gray KJ, Choi GB, Drew DA, Sen P, Villani AC, Edlow AG, Huh JR. | Cell Rep | 2024 | Pregnancy, Cytokines, T cells, Immune cells, Immune responses, Maternal Immune Activation, Single-cell Rna-seq, Covid-19, Sars-cov-2, Cp: Immunology, CD8-Positive T-Lymphocytes, Pregnancy Complications, Infectious, Cytokines, COVID-19, SARS-CoV-2 | | 39504241 | 10.1016/j.celrep.2024.114933 | |
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| Comprehensive human respiratory genome catalogue underlies the high resolution and precision of the respiratory microbiome. | Li Y, Pan G, Wang S, Li Z, Yang R, Jiang Y, Chen Y, Li SC, Shen B. | Brief Bioinform | 2024 | Microbial Etiology, Respiratory Microbiome, Metagenomic Assembly, Human Respiratory Genome Catalogue, Microbiota | Genetics | 39581874 | 10.1093/bib/bbae620 | |
| Analysis of lung microbiota in pediatric pneumonia patients using BALF metagenomic next-generation sequencing: A retrospective observational study. | Lu S, Sun L, Cao L, Zhao M, Guo Y, Li M, Duan S, Zhai Y, Zhang X, Wang Y, Gai W, Cui X. | Medicine (Baltimore) | 2024 | Lung, Bronchoalveolar Lavage Fluid, Pneumonia, Metagenomics, High-Throughput Nucleotide Sequencing, Microbiota | Genetics | 39705480 | 10.1097/md.0000000000040860 | |
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| Classification of NSCLC subtypes using lung microbiome from resected tissue based on machine learning methods. | Kashyap P, Raj KV, Sharma J, Dutt N, Yadav P. | NPJ Syst Biol Appl | 2025 | Lung, Carcinoma, Non-Small-Cell Lung, Lung Neoplasms, Microbiota, Machine Learning | | 39824879 | 10.1038/s41540-025-00491-4 | |
| Potential roles of cigarette smoking on gut microbiota profile among Chinese men. | Fan J, Zeng F, Zhong H, Cai J, Shen W, Cheng C, He C, Liu Y, Zhou Y, Chen S, Zhu Y, Liu T, Zheng JS, Wang L, Chen YM, Ma W, Zhou D. | BMC Med | 2025 | Chinese, Cigarette smoking, Gut Microbiota, Male Population, Gastrointestinal Microbiome, Cigarette Smoking | | 39838369 | 10.1186/s12916-025-03852-2 | |
| Population-level gut microbiome and its associations with environmental factors and metabolic disorders in Southwest China. | Qu Q, Dou Q, Xiang Z, Yu B, Chen L, Fan Z, Zhao X, Yang S, Zeng P. | NPJ Biofilms Microbiomes | 2025 | Bacteria, Metabolic Diseases, Gastrointestinal Microbiome | | 39905038 | 10.1038/s41522-025-00661-6 | |
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| Variations in salivary microbiome and metabolites are associated with immunotherapy efficacy in patients with advanced NSCLC. | Huang D, Chen Y, Li C, Yang S, Lin L, Zhang X, Su X, Liu L, Zhao H, Luo T, Cai S, Ren Q, Dong H. | mSystems | 2025 | Fat metabolism, Non-small cell lung cancer, Saliva Microbiome, Immunotherapy Response, Saliva, Carcinoma, Non-Small-Cell Lung, Lung Neoplasms, Immunotherapy, Microbiota | Metabolism | 39927795 | 10.1128/msystems.01115-24 | |
| Effects of Therapeutic Antibiotic Exposure on the Oropharyngeal and Fecal Microbiota in Infants With Cystic Fibrosis. | Hayden HS, Nelson MT, Ross SE, Verster AJ, Bouzek DC, Eng A, Waalkes A, Penewit K, Kopp BT, Siracusa C, Rock MJ, Salipante SJ, Hoffman LR, Sanders DB. | Pediatr Pulmonol | 2025 | Antibiotic Resistance, metagenome, Respiratory Symptoms, Oropharynx, Feces, Cystic Fibrosis, beta-Lactams, Anti-Bacterial Agents, Microbiota | Genetics | 40042126 | 10.1002/ppul.71024 | |
| Analysis of the bronchoalveolar lavage fluid microbial flora in COPD patients at different lung function during acute exacerbation. | Bahetjan K, Yu-Xia, Lin S, Aili N, Yang H, Du S. | Sci Rep | 2025 | Lung function, Microbiome, Bronchoalveolar Lavage Fluid (Balf), Acute Exacerbation Of Chronic Obstructive Pulmonary Disease (Aecopd), Exacerbation Frequency, Metagenomic Next-generation Sequencing (Mngs), Lung, Bronchoalveolar Lavage Fluid, Pulmonary Disease, Chronic Obstructive, Microbiota | | 40240456 | 10.1038/s41598-025-96746-5 | |
| ACE inhibitory casein peptide lowers blood pressure and reshapes gut microbiota in a randomized double blind placebo controlled trial. | Li K, Jiang P, Li S, Sun J, Qi C. | Sci Rep | 2025 | Hypertension, Casein hydrolysate, Microbiota, Antihypertensive Effect, Double-blind Randomized Placebo-controlled Clinical Study, Hypertension, Caseins, Antihypertensive Agents, Angiotensin-Converting Enzyme Inhibitors, Blood Pressure, Gastrointestinal Microbiome | | 40263513 | 10.1038/s41598-025-98446-6 | |
| Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic gram-positive organisms (GPOs) in a large integrated Canadian healthcare region. | Church D, Griener T, Gregson D. | Microbiol Spectr | 2025 | Identification, Gram-positive bacteria, MALDI-TOF, Vitek Ms, Gram-Positive Bacteria, Gram-Positive Bacterial Infections, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Bacterial Typing Techniques | | 40272170 | 10.1128/spectrum.02545-24 | |
| Distal gut colonization by oral bacteria during intensive chemotherapy: direct evidence from strain-level analysis of paired samples. | Raychaudhuri S, Gem H, Chung K, McLean JS, Kerns KA, Hullar MAJ, Elmorr E, Appelbaum JB, Percival MM, Walter RB, Halpern AB, Minot SS, Kim K, Zevin AS, Rashidi A. | NPJ Biofilms Microbiomes | 2025 | Mouth, Bacteria, Antineoplastic Agents, Gastrointestinal Microbiome | | 40419513 | 10.1038/s41522-025-00725-7 | |
| Altered microbiota of the lower respiratory tract and its association with COVID-19 severity analysed by metagenomics and metatranscriptomics. | Wang D, Duan Y, He L, Jiang J, Xian J, Yuan K, Zhang R, Zhang H, Wang J, Li N, Huang M, Hu C, Lu S, Luo Z, Deng T, Zhang Z, Chen B, Li W. | Commun Biol | 2025 | Respiratory System, Microbiota, COVID-19, SARS-CoV-2 | | 40419790 | 10.1038/s42003-025-08234-1 | |
| Differences of the respiratory microbiota between children suffering from community acquired pneumonia with presence or absence of asthma. | Chen L, Chen H, Lv T, Guo X, Wu W, Zhao D, Liu F. | Sci Rep | 2025 | Pathogen, Asthma, Community-acquired pneumonia, Respiratory Microbiota, Metagenomic Second-generation Sequencing, Community-Acquired Infections, Asthma, Pneumonia, Microbiota | | 40593979 | 10.1038/s41598-025-04847-y | |
| A Pulmonary Abscess Caused by Porphyromonas gingivalis Infection: A Case Report and Literature Review. | Chen X, Wu L, Wu R, Dong J. | Clin Respir J | 2025 | Porphyromonas gingivalis, Periodontitis, Lung abscess, Porphyromonas gingivalis, Bacteroidaceae Infections, Lung Abscess | | 40667600 | 10.1111/crj.70099 | |
| Microbial profile of the appendix niche in acute appendicitis: a novel sampling approach. | Ma H, Wang M, Feng Y, Zhang W, Wang W, Xie Y, Kong G, Feng J, Wang P, Wang Q, Huang X. | FEBS Open Bio | 2025 | Acute Appendicitis, Microbial Profile, Shotgun Metagenomic Sequencing, Appendix Niche, Endoscopic Retrograde Appendicitis Treatment | | 40847462 | 10.1002/2211-5463.70105 | |
| Diagnosis of Pulmonary Actinomycosis Caused by Actinomyces graevenitzii: a Case Series of Three Patients. | Zhang X, He Q, Mao G, Liang M. | Clin Lab | 2025 | Actinomyces, Actinomycosis, Lung Diseases | | 40923736 | 10.7754/clin.lab.2025.250254 | |
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