@ref: 18910
BacDive-ID: 23159
DSM-Number: 44980
keywords: genome sequence, 16S sequence, mesophilic
description: Rhodococcus sp. BCP1 is a mesophilic prokaryote that was isolated from sediment contaminated with chlorinated solvents.
doi: 10.13145/bacdive23159.20251217.10
| @ref | synonym |
|---|---|
| 20215 | Prescottia |
| 20215 | Prescottella |
| 20215 | Prescottella |
| 20215 | Rhodococcoides |
@ref: 18910
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus sp.
full scientific name: Rhodococcus sp.
strain designation: BCP1
type strain: no
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 93 | |
| 125438 | 90.002 | positive | |
| 125439 | 95 | positive |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 91.598 |
| 125439 | aerobe | 93.8 |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Sediment |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.002 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.337 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 54.587 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.9 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.598 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 72.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 68.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 95 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 93.8 |
@ref: 18910
culture collection no.: DSM 44980
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18910 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44980) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44980 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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