@ref: 20713
BacDive-ID: 24289
DSM-Number: 27245
keywords: genome sequence, 16S sequence, psychrophilic
description: Paenibacillus darwinianus Br is a psychrophilic prokaryote that was isolated from gamma-irradiated soil.
doi: 10.13145/bacdive24289.20251217.10
@ref: 20713
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus darwinianus
full scientific name: Paenibacillus darwinianus Dsouza et al. 2014
strain designation: Br
type strain: yes
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20713 | Paenibacillus darwinianus strain Br 16S ribosomal RNA gene, partial sequence | KF264455 | 1412 | nuccore | 1380763 |
| 124043 | Paenibacillus darwinianus strain MB 16S ribosomal RNA gene, partial sequence. | KF264456 | 1412 | nuccore | 1380763 |
| 124043 | Paenibacillus darwinianus strain MB 16S ribosomal RNA gene, partial sequence. | KF264457 | 1409 | nuccore | 1380763 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 71.566 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.247 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 73.295 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 84.425 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 76.02 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 79.743 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 93.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 90.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 81.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 96.4 |
@ref: 20713
culture collection no.: DSM 27245, ICMP 19912
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24449790 | Paenibacillus darwinianus sp. nov., isolated from gamma-irradiated Antarctic soil. | Dsouza M, Taylor MW, Ryan J, MacKenzie A, Lagutin K, Anderson RF, Turner SJ, Aislabie J | Int J Syst Evol Microbiol | 10.1099/ijs.0.056697-0 | 2014 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, Fatty Acids/chemistry, Molecular Sequence Data, Paenibacillus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| 25285990 | Genome-based comparative analyses of Antarctic and temperate species of Paenibacillus. | Dsouza M, Taylor MW, Turner SJ, Aislabie J. | PLoS One | 10.1371/journal.pone.0108009 | 2014 | genetics, genetics |
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20713 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27245 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27245) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | StrainInfo—the central database for linked microbial strain identifiers | 10.1093/database/baaf059 |
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