Archive BacDiveID:10.13145/bacdive24538.20251217.10

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BacDive ID 24538

Type strain

Strain Designation VF70612-S4

Culture col. no. DSM 24909 VF70612-S4

NCBI tax ID(s) 1017354

Links

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For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 20787

BacDive-ID: 24538

DSM-Number: 24909

keywords: 16S sequence, mesophilic

description: Rubrobacter bracarensis VF70612-S4 is a mesophilic prokaryote that was isolated from green biofilm.

NCBI tax id

NCBI tax id: 1017354
Matching level: species

strain history

@ref: 20787
history: <- V. Jurado, CSIC; VF70612-S4 <- A. Miller

doi: 10.13145/bacdive24538.20251217.10

Name and taxonomic classification

LPSN

@ref: 20215
description: kingdom/bacillati
keyword: phylum/actinomycetota
phylum: Actinomycetota
class: Rubrobacteria
order: Rubrobacterales
family: Rubrobacteraceae
genus: Rubrobacter
species: Rubrobacter bracarensis
full scientific name: Rubrobacter bracarensis Jurado et al. 2013

@ref: 20787

domain: Bacteria

phylum: Actinobacteria

class: Rubrobacteria

order: Rubrobacterales

family: Rubrobacteraceae

genus: Rubrobacter

species: Rubrobacter bracarensis

full scientific name: Rubrobacter bracarensis Jurado et al. 2013 emend. Albuquerque et al. 2014

strain designation: VF70612-S4

type strain: no

Morphology

colony morphology

@ref: 20787
incubation period: 3-7 days

Culture and growth conditions

culture medium

@ref: 20787
name: TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350)
growth: yes
link: https://mediadive.dsmz.de/medium/1350
composition: Name: TRYPTICASE SOY AGAR NA-MG (DSMZ Medium 1350) Composition: NaCl 30.0 g/l Trypticase soy broth 30.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Distilled water

culture temp

@ref: 20787
growth: positive
type: growth
temperature: 28

Isolation, sampling and environmental information

isolation

@ref: 20787
sample type: green biofilm
geographic location: Barcelos
country: Portugal
origin.country: PRT
continent: Europe

isolation source categories

Cat1: #Environmental
Cat2: #Biofilm

taxonmaps

@ref: 69479
File name: preview.99_12190.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_408;96_2197;97_7435;98_9161;99_12190&stattab=map
Last taxonomy: Rubrobacter bracarensis subclade
16S sequence: HE672087
Sequence Identity:
Total samples: 449
soil counts: 86
aquatic counts: 89
animal counts: 252
plant counts: 22

Interaction and safety

risk assessment

@ref: 20787
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 20787
description: Rubrobacter bracarensis partial 16S rRNA gene, strain VFA70612_S4
accession: HE672087
length: 1441
database: nuccore
NCBI tax ID: 1017354

Literature

@ref: 20787

culture collection no.: DSM 24909

straininfo link

@ref: 126262
straininfo: 396821

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
20787	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-24909	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24909)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer	StrainInfo—the central database for linked microbial strain identifiers	10.1093/database/baaf059

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General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

Morphology

colony morphology

Culture and growth conditions

culture medium

culture temp

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Interaction and safety

risk assessment

Sequence information

16S sequences

Literature

straininfo link

Reference

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