@ref: 6999
BacDive-ID: 2834
DSM-Number: 17460
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Clostridium saccharogumia SDG-Mt85-3Db is an anaerobe bacterium that was isolated from faecal sample of a healthy male adult.
| NCBI tax id | Matching level |
|---|---|
| 341225 | species |
| 1121333 | strain |
doi: 10.13145/bacdive2834.20260601.11
@ref: 6999
domain: Bacteria
phylum: Bacillota
class: Erysipelotrichia
order: Erysipelotrichales
family: Coprobacillaceae
genus: Thomasclavelia
species: Thomasclavelia saccharogumia
full scientific name: Thomasclavelia saccharogumia
strain designation: SDG-Mt85-3Db
type strain: yes
| @ref | growth | type | temperature |
|---|---|---|---|
| 6999 | positive | growth | 37 |
| 59205 | positive | growth | 37 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 6999 | anaerobe | |
| 59205 | anaerobe | |
| 125439 | facultative anaerobe | 97.961 |
| @ref | sample type | geographic location | country | origin.country | continent | host species | sampling date |
|---|---|---|---|---|---|---|---|
| 6999 | faecal sample of a healthy male adult | Berlin | Germany | DEU | Europe | ||
| 59205 | Human feces,26-yr-old healthy man | Germany | DEU | Europe | Homo sapiens | 2005-01-20 |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human | #Male |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 80.306 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 84.228 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.015 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 54.484 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 92.733 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 81.627 | no |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 97.961 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 73.497 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 67.497 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 63.853 |
@ref: 6999
culture collection no.: DSM 17460, CCUG 51486
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17196483 | Clostridium saccharogumia sp. nov. and Lactonifactor longoviformis gen. nov., sp. nov., two novel human faecal bacteria involved in the conversion of the dietary phytoestrogen secoisolariciresinol diglucoside. | Clavel T, Lippman R, Gavini F, Dore J, Blaut M | Syst Appl Microbiol | 10.1016/j.syapm.2006.02.003 | 2007 | 4-Butyrolactone/analogs & derivatives/metabolism, Adult, Base Composition, Butylene Glycols/*metabolism, Clostridium/*classification/genetics/growth & development/metabolism, Colon/microbiology, Culture Media, DNA/chemistry, DNA, Ribosomal/genetics, Dietary Carbohydrates/*metabolism, Feces/*microbiology, Genotype, Glucosides/*metabolism, Gram-Positive Rods/*classification/genetics/growth & development/metabolism, Humans, Lignans/metabolism, Male, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Phytoestrogens/*metabolism, RNA, Ribosomal, 16S/genetics | Metabolism |
| Phylogeny | 26669711 | Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov. | Mourembou G, Yasir M, Azhar EI, Lagier JC, Bibi F, Jiman-Fatani AA, Helmy N, Robert C, Rathored J, Fournier PE, Raoult D, Million M. | OMICS | 10.1089/omi.2015.0143 | 2015 | classification, genetics, Metagenome, Metagenomics, Gastrointestinal Microbiome | Genetics |
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6999 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17460) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17460 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 59205 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 51486) | https://www.ccug.se/strain?id=51486 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | |
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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