@ref: 5718
BacDive-ID: 4285
DSM-Number: 15116
keywords: genome sequence, 16S sequence, anaerobe, mesophilic
description: Halorhodospira neutriphila DSM 15116 is an anaerobe, mesophilic prokaryote that was isolated from microbial mat in marine saltern.
| @ref | history |
|---|---|
| 5718 | <- P. Caumette; SG3301 <- R. Matheron |
| 67770 | A. Hirschler-Réa SG 3301. |
doi: 10.13145/bacdive4285.20251217.10
@ref: 5718
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Halorhodospira
species: Halorhodospira neutriphila
full scientific name: Halorhodospira neutriphila Hirschler-Réa et al. 2003
type strain: yes
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 98.75 |
| 125439 | negative | 91.3 |
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5718 | HALORHODOSPIRA MEDIUM (DSMZ Medium 999) | yes | https://mediadive.dsmz.de/medium/999 | Name: HALORHODOSPIRA MEDIUM (DSMZ Medium 999) Composition: NaCl 100.0 g/l NaHCO3 2.0 g/l MgCl2 x 6 H2O 2.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l Na2S x 9 H2O 0.75 g/l NH4Cl 0.5 g/l CaCl2 x 2 H2O 0.05 g/l FeSO4 x 7 H2O 0.0011 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l Pyridoxamine 5e-05 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Vitamine B12 2e-05 g/l Nicotinate 2e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l p-Aminobenzoate 1e-05 g/l Thiamine 1e-05 g/l Pantothenate 5e-06 g/l Biotine 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water |
| 5718 | CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421) | yes | https://mediadive.dsmz.de/medium/421 | Name: CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421) Composition: NaCl 100.0 g/l MgCl2 x 6 H2O 3.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l Na acetate 0.5 g/l Sodium Thiosulfate 0.5 g/l Ammonium chloride 0.349999 g/l KH2PO4 0.349999 g/l KCl 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Dextrose 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Ammonium acetate 0.25 g/l Yeast extract 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l H2O Distilled water |
| @ref | growth | type | temperature |
|---|---|---|---|
| 5718 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
| 5718 | positive | growth | 28 |
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 90.847 |
| 125439 | no | 98.7 |
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5718 | microbial mat in marine saltern | Rhone Delta | France | FRA | Europe |
| 67770 | Microbial mat in marine saltern |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Microbial community | #Microbial mat |
| #Condition | #Saline |
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Halorhodospira neutriphila gene for 16S ribosomal RNA, partial sequence, strain: JCM 17835 | AB643473 | 1507 | nuccore | 168379 |
| 20218 | Halorhodospira neutrophila partial 16S rRNA gene, strain SG3301 | AJ318525 | 1356 | nuccore | 168379 |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.75 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 52.182 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.847 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 68.382 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 86.263 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 73.998 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 78.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 91.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate anaerobe | 85 |
@ref: 5718
culture collection no.: DSM 15116, SG 3301, JCM 17835
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12656167 | Isolation and characterization of spirilloid purple phototrophic bacteria forming red layers in microbial mats of Mediterranean salterns: description of Halorhodospira neutriphila sp. nov. and emendation of the genus Halorhodospira. | Hirschler-Rea A, Matheron R, Riffaud C, Moune S, Eatock C, Herbert RA, Willison JC, Caumette P | Int J Syst Evol Microbiol | 10.1099/ijs.0.02226-0 | 2003 | Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Ecosystem, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Hydrogen-Ion Concentration, Light, Mediterranean Region, Microscopy, Electron, Molecular Sequence Data, Phylogeny, Pigments, Biological/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sodium Chloride/isolation & purification, Sulfur/metabolism | Enzymology |
| Enzymology | 22185719 | Prokaryotic diversity in Aran-Bidgol salt lake, the largest hypersaline playa in Iran. | Makhdoumi-Kakhki A, Amoozegar MA, Kazemi B, Pasic L, Ventosa A. | Microbes Environ | 10.1264/jsme2.me11267 | 2012 | isolation & purification, isolation & purification, Biodiversity, microbiology | Phylogeny |
| Genetics | 33375353 | Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses. | Imhoff JF, Rahn T, Kunzel S, Keller A, Neulinger SC. | Microorganisms | 10.3390/microorganisms9010046 | 2020 | Osmotic Adaptation, Ectoine Biosynthesis, Genomes Of Photosynthetic Bacteria, Glycine Betaine Biosynthesis, Phylogeny Of Osmolyte Biosynthesis | Phylogeny |
| Phylogeny | 35208750 | Genomic Comparison, Phylogeny and Taxonomic Reevaluation of the Ectothiorhodospiraceae and Description of Halorhodospiraceae fam. nov. and Halochlorospira gen. nov. | Imhoff JF, Kyndt JA, Meyer TE. | Microorganisms | 10.3390/microorganisms10020295 | 2022 | Purple Sulfur Bacteria, Ectothiorhodospiraceae, Halorhodospiraceae, Genomic Phylogeny, New Family And Genus |
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5718 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15116) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15116 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
License