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BacDive ID 435
Type strain
Strain Designation TC-34
Culture col. no. DSM 22381 CGMCC 1.6357 JCM 15090 TC-34
NCBI tax ID(s) 471514
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 16316

BacDive-ID: 435

DSM-Number: 22381

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, ovoid-shaped

description: Alicyclobacillus ferrooxydans TC-34 is an aerobe, spore-forming, mesophilic bacterium that was isolated from solfatoric soil.

NCBI tax id

  • NCBI tax id: 471514
  • Matching level: species

strain history

@refhistory
16316<- JCM/RIKEN; JCM 15090 <- C.-Y. Jiang, Chinese Acad. Sci. (CAS), Beijing; TC-34
67770C.-Y. Jiang TC-34.

doi: 10.13145/bacdive435.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Alicyclobacillaceae
  • genus: Alicyclobacillus
  • species: Alicyclobacillus ferrooxydans
  • full scientific name: Alicyclobacillus ferrooxydans Jiang et al. 2008

@ref: 16316

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Alicyclobacillaceae

genus: Alicyclobacillus

species: Alicyclobacillus ferrooxydans

full scientific name: Alicyclobacillus ferrooxydans Jiang et al. 2008

strain designation: TC-34

type strain: yes

Morphology

cell morphology

  • @ref: 31191
  • gram stain: positive
  • cell length: 1-1.5 µm
  • cell width: 0.4-0.6 µm
  • cell shape: ovoid-shaped
  • motility: no

pigmentation

  • @ref: 31191
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16316
  • name: ALICYCLOBACILLUS FERROOXYDANS MEDIUM (DSMZ Medium 1201)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1201
  • composition: Name: ALICYCLOBACILLUS FERROOXYDANS MEDIUM (DSMZ Medium 1201) Composition: FeSO4 x 7 H2O 14.0 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.4 g/l Yeast extract 0.2 g/l K2HPO4 0.2 g/l K2S4O6 0.15 g/l KCl 0.1 g/l MnSO4 x H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperature
16316positivegrowth30
31191positivegrowth17-40
31191positiveoptimum28
67770positivegrowth30

culture pH

@refabilitytypepHPH range
31191positivegrowth02-06acidophile
31191positiveoptimum3

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
31191aerobe
125439obligate aerobe96.6

spore formation

  • @ref: 31191
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
31191NaClpositivegrowth0-3 %
31191NaClpositiveoptimum0-3 %

observation

@refobservation
31191aggregates in clumps
67770quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3119122599arabinose+carbon source
3119117057cellobiose+carbon source
3119128757fructose+carbon source
3119133984fucose+carbon source
3119128260galactose+carbon source
3119117234glucose+carbon source
3119117306maltose+carbon source
3119137684mannose+carbon source
3119130911sorbitol+carbon source

metabolite production

  • @ref: 31191
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 31191
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
31191catalase+1.11.1.6
31191cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16316solfatoric soilTengcong county, Yunnan provinceChinaCHNAsia
67770Solfataric soilTengchong, Yunnan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Volcanic

taxonmaps

  • @ref: 69479
  • File name: preview.99_2997.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_313;96_1575;97_1881;98_2309;99_2997&stattab=map
  • Last taxonomy: Alicyclobacillus ferrooxydans subclade
  • 16S sequence: EU137838
  • Sequence Identity:
  • Total samples: 1864
  • soil counts: 238
  • aquatic counts: 168
  • animal counts: 1408
  • plant counts: 50

Safety information

risk assessment

  • @ref: 16316
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16316
  • description: Alicyclobacillus ferrooxydans strain TC-34 16S ribosomal RNA gene, partial sequence
  • accession: EU137838
  • length: 1496
  • database: nuccore
  • NCBI tax ID: 471514

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alicyclobacillus ferrooxydans strain TC-34471514.4wgspatric471514
66792Alicyclobacillus ferrooxydans TC-342713896827draftimg471514
67770Alicyclobacillus ferrooxydans TC-34GCA_001399675contigncbi471514

GC content

@refGC-contentmethod
1631648.6
6777048.6thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes65.101no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.188yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes87.367no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes77.021no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno81.042yes
125438motile2+flagellatedAbility to perform flagellated movementyes73.246no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes51.6
125439BacteriaNetmotilityAbility to perform movementyes67.4
125439BacteriaNetgram_stainReaction to gram-stainingpositive67.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe96.6

External links

@ref: 16316

culture collection no.: DSM 22381, CGMCC 1.6357, JCM 15090

straininfo link

  • @ref: 70114
  • straininfo: 407747

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19060079Alicyclobacillus ferrooxydans sp. nov., a ferrous-oxidizing bacterium from solfataric soil.Jiang CY, Liu Y, Liu YY, You XY, Guo X, Liu SJInt J Syst Evol Microbiol10.1099/ijs.0.2008/000562-02008Bacillaceae/chemistry/*classification/genetics/*physiology, Fatty Acids/analysis, Iron/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species SpecificityGenetics
Phylogeny25037879Alicyclobacillus tengchongensis sp. nov., a thermo-acidophilic bacterium isolated from hot spring soil.Kim MG, Lee JC, Park DJ, Li WJ, Kim CJJ Microbiol10.1007/s12275-014-3625-z2014Aerobiosis, Alicyclobacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hot Springs, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Peptidoglycan/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny35312474Alicyclobacillus curvatus sp. nov. and Alicyclobacillus mengziensis sp. nov., two acidophilic bacteria isolated from acid mine drainage.Jiang Z, Wu D, Liang ZL, Li XT, Huang Y, Zhou N, Liu ZH, Zhang GJ, Jia Y, Yin HQ, Liu SJ, Jiang CYInt J Syst Evol Microbiol10.1099/ijsem.0.0052852022*Alicyclobacillus, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16316Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22381)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22381
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31191Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2751828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70114Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407747.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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