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BacDive ID 5181
Type strain
Strain Designation 370-85
Culture col. no. DSM 16940 ATCC 49490 CIP 103637 NBRC 103172 IAM 14444 CDC 0370-85 JCM 21227 370-85 3 more
NCBI tax ID(s) 1005994 158852
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 6657

BacDive-ID: 5181

DSM-Number: 16940

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Trabulsiella guamensis 370-85 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from vacuum cleaner contents.

NCBI tax id

NCBI tax idMatching level
158852species
1005994strain

strain history

@refhistory
6657<- CIP <- ATCC <- CDC <- Guam Publ. Health Lab, USA
67770IAM 14444 <-- ATCC 49490 <-- A. M. Murlin; CDC 0370-85 <-- Guam Public Health Lab..
119749CIP <- 1993, ATCC <- CDC: strain 370-85 <- Guam Pub. Hlth. Lab., USA

doi: 10.13145/bacdive5181.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Trabulsiella
  • species: Trabulsiella guamensis
  • full scientific name: Trabulsiella guamensis McWhorter et al. 1992

@ref: 6657

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Trabulsiella

species: Trabulsiella guamensis

full scientific name: Trabulsiella guamensis McWhorter et al. 1992

strain designation: 370-85

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
119749negativerod-shapedyes
125438negative100
125439negative98

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40748MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119749CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
6657TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

@refgrowthtypetemperature
6657positivegrowth37
40748positivegrowth37
67770positivegrowth30
119749positivegrowth41
119749nogrowth5
119749nogrowth10

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
119749facultative anaerobe
125439aerobe91

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 95

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11974916947citrate+carbon source
11974917632nitrate+reduction
11974916301nitrite-reduction
11974915792malonate-assimilation
119749132112sodium thiosulfate+builds gas from
68371Potassium 5-ketogluconate+builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
68371Potassium 2-ketogluconate+builds acid from
6837124265gluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose+builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol+builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose+builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

antibiotic resistance

  • @ref: 119749
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
11974935581indoleno
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-testindole test
11974915688acetoin-
11974917234glucose+
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
119749oxidase-
119749beta-galactosidase+3.2.1.23
119749alcohol dehydrogenase-1.1.1.1
119749gelatinase-
119749catalase+1.11.1.6
119749lysine decarboxylase+4.1.1.18
119749ornithine decarboxylase+4.1.1.17
119749tryptophan deaminase-
119749urease-3.5.1.5
68368gelatinase+
68368urease-3.5.1.5
68368cytochrome oxidase-1.9.3.1
68368tryptophan deaminase-4.1.99.1
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
6657++++++---++++-++--++-+-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119749+--+++---++++-+--++--+----++---+------+--+----+++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
6657vacuum cleaner contentsAtlantaUSAUSANorth America
67770Vacuum cleaner contentsGuamUSAUSANorth America
119749Other, Vacuum cleaner contentsAtlanta, GeorgiaUnited States of AmericaUSANorth America1985

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Engineered product

taxonmaps

  • @ref: 69479
  • File name: preview.99_128777.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_2279;99_128777&stattab=map
  • Last taxonomy: Trabulsiella
  • 16S sequence: AB273737
  • Sequence Identity:
  • Total samples: 19
  • soil counts: 1
  • aquatic counts: 3
  • animal counts: 9
  • plant counts: 6

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
66571Risk group (German classification)
1197491Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
6657Trabulsiella guamensis strain ATCC 49490 16S ribosomal RNA gene, partial sequenceAY3738301441nuccore1005994
67770Trabulsiella guamensis gene for 16S rRNA, partial sequence, strain: GTC 1379AB2737371490nuccore158852
67770Trabulsiella guamensis gene for 16S rRNA, partial sequence, strain: NBRC 103172AB6819791467nuccore158852

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Trabulsiella guamensis ATCC 494901005994.3wgspatric1005994
66792Trabulsiella guamensis ATCC 494902588253800draftimg1005994
67770Trabulsiella guamensis ATCC 49490GCA_000734965contigncbi1005994

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno100no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.215no
125438spore-formingspore-formingAbility to form endo- or exosporesno89.184no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no67.192yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno99.5yes
125438motile2+flagellatedAbility to perform flagellated movementyes80.006no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno95
125439BacteriaNetmotilityAbility to perform movementyes56.5
125439BacteriaNetgram_stainReaction to gram-stainingnegative98
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe91

External links

@ref: 6657

culture collection no.: DSM 16940, ATCC 49490, CIP 103637, JCM 21227, CDC 0370-85, IAM 14444, NBRC 103172

straininfo link

  • @ref: 74673
  • straininfo: 7844

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1885744Trabulsiella guamensis, a new genus and species of the family Enterobacteriaceae that resembles Salmonella subgroups 4 and 5.McWhorter AC, Haddock RL, Nocon FA, Steigerwalt AG, Brenner DJ, Aleksic S, Bockemuhl J, Farmer JJ 3rdJ Clin Microbiol10.1128/jcm.29.7.1480-1485.19911991DNA, Bacterial/genetics, Drug Resistance, Microbial, Enterobacteriaceae/*classification/genetics/isolation & purification, Humans, Nucleic Acid Hybridization, Salmonella/classification, Sequence Homology, Nucleic Acid, Species Specificity, Terminology as TopicPathogenicity
Phylogeny17392189Trabulsiella odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanus Shiraki.Chou JH, Chen WM, Arun AB, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.64632-02007Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Enterobacteriaceae/*classification/genetics, Gastrointestinal Tract/microbiology, Genes, rRNA, Isoptera/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6657Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16940)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16940
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40748Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15457
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74673Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7844.1StrainInfo: A central database for resolving microbial strain identifiers
119749Curators of the CIPCollection of Institut Pasteur (CIP 103637)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103637
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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