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BacDive ID 5386
Type strain
Strain Designation O22-2-10, 022-2-10
Culture col. no. DSM 17792 CIP 108956 KMM 3465 O22-2-10 022-2-10
NCBI tax ID(s) 291985
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 7187

BacDive-ID: 5386

DSM-Number: 17792

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Qipengyuania vulgaris O22-2-10 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Starfish Stellaster equestris.

NCBI tax id

  • NCBI tax id: 291985
  • Matching level: species

strain history

@refhistory
7187<- E. P. Ivanova, Swinburne Univ. of Techn., Hawthorn, Australia; O22-2-10
123891CIP <- 2005, E. Ivanova, Swinburne Univ., Hawthorn, Victoria, Australia: strain 022-2-10

doi: 10.13145/bacdive5386.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Qipengyuania
  • species: Qipengyuania vulgaris
  • full scientific name: Qipengyuania vulgaris (Ivanova et al. 2006) Xu et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Erythrobacter vulgaris

@ref: 7187

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Qipengyuania

species: Qipengyuania vulgaris

full scientific name: Qipengyuania vulgaris (Ivanova et al. 2006) Xu et al. 2020

strain designation: O22-2-10, 022-2-10

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
123891negativerod-shapedno
125439negative99.7
125438negative97.802

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7187BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42286Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
123891CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
7187positivegrowth28
42286positivegrowth30

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
123891obligate aerobe
125439aerobe94.2

spore formation

@refspore formationconfidence
125439no98.7
125438no91.93

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12389117632nitrate-reduction
12389116301nitrite-reduction

metabolite production

  • @ref: 123891
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
123891oxidase+
123891alcohol dehydrogenase-1.1.1.1
123891catalase+1.11.1.6
123891lysine decarboxylase-4.1.1.18
123891ornithine decarboxylase-4.1.1.17
123891urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123891-+++-++-+-+----+----

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcontinentcountryorigin.country
7187Starfish Stellaster equestrisStellaster equestrisSouth China SeaAsia
123891Starfish, Stellaster equestrisAsiaChinaCHN

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Echinodermata

taxonmaps

  • @ref: 69479
  • File name: preview.99_15174.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_251;97_274;98_305;99_15174&stattab=map
  • Last taxonomy: Qipengyuania
  • 16S sequence: AY706935
  • Sequence Identity:
  • Total samples: 184
  • soil counts: 9
  • aquatic counts: 170
  • animal counts: 4
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
71871Risk group (German classification)
1238911Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7187
  • description: Erythrobacter vulgaris strain 022 2-10 16S ribosomal RNA gene, partial sequence
  • accession: AY706935
  • length: 1417
  • database: nuccore
  • NCBI tax ID: 291985

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Qipengyuania vulgaris DSM 17792GCA_009827325contigncbi291985
66792Erythrobacter vulgaris strain DSM 17792291985.10wgspatric291985

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.802no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.457yes
125438spore-formingspore-formingAbility to form endo- or exosporesno91.93no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.124yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.303yes
125438motile2+flagellatedAbility to perform flagellated movementno65.448no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.7
125439BacteriaNetmotilityAbility to perform movementno54.6
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.7
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe94.2

External links

@ref: 7187

culture collection no.: DSM 17792, CIP 108956, KMM 3465

straininfo link

  • @ref: 74877
  • straininfo: 290971

Reference

@idauthorscataloguedoi/urltitle
7187Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17792)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17792
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42286Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6643
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74877Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID290971.1StrainInfo: A central database for resolving microbial strain identifiers
123891Curators of the CIPCollection of Institut Pasteur (CIP 108956)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108956
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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