@ref: 8723
BacDive-ID: 6387
DSM-Number: 20332
keywords: genome sequence, 16S sequence, microaerophile, mesophilic, Gram-positive, coccus-shaped
description: Pediococcus parvulus S182 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from silage.
| @ref | history |
|---|---|
| 8723 | <- NCDO <- H.R. White, S182 |
| 67770 | IAM 12291 (Pediococus pentosaceus) <-- K. Sakaguchi <-- H. R. White S-182 (Pediococcus parvulus). |
| 67770 | ATCC 19371 <-- NCIB 9447 <-- E. Coster QEC 106 (S-182). |
| 121602 | CIP <- 1986, NCFB <- H.R. White, Queen Elizabeth College, London, UK: strain S 182 |
doi: 10.13145/bacdive6387.20251217.10
@ref: 8723
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Pediococcus
species: Pediococcus parvulus
full scientific name: Pediococcus parvulus Günther and White 1961
strain designation: S182, S 182
type strain: yes
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 121602 | positive | coccus-shaped | no | |
| 125438 | no | 91 | ||
| 125438 | positive | 94.362 |
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 8723 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
| 38095 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
| 121602 | CIP Medium 41 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=41 | |
| 121602 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
| @ref | growth | type | temperature |
|---|---|---|---|
| 8723 | positive | growth | 30 |
| 38095 | positive | growth | 30 |
| 49241 | positive | growth | 30 |
| 49241 | positive | growth | 37 |
| 67770 | positive | growth | 30 |
| 121602 | positive | growth | 25-37 |
| 121602 | negative | growth | 15 |
| 121602 | negative | growth | 45 |
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 49241 | microaerophile | |
| 121602 | facultative anaerobe | |
| 125439 | obligate aerobe | 97.1 |
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 121602 | 17632 | nitrate | - | reduction |
| 121602 | 16301 | nitrite | - | reduction |
| 121602 | 17632 | nitrate | + | respiration |
| 68371 | 16634 | raffinose | - | builds acid from |
| 68371 | 6731 | melezitose | - | builds acid from |
| 68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
| 68371 | 12936 | D-galactose | - | builds acid from |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | |
| 68371 | 24265 | gluconate | - | builds acid from |
| 68371 | 18403 | L-arabitol | - | builds acid from |
| 68371 | 18333 | D-arabitol | - | builds acid from |
| 68371 | 18287 | L-fucose | - | builds acid from |
| 68371 | 28847 | D-fucose | - | builds acid from |
| 68371 | 16443 | D-tagatose | - | builds acid from |
| 68371 | 62318 | D-lyxose | - | builds acid from |
| 68371 | 32528 | turanose | - | builds acid from |
| 68371 | 17151 | xylitol | - | builds acid from |
| 68371 | 28087 | glycogen | - | builds acid from |
| 68371 | 28017 | starch | - | builds acid from |
| 68371 | 15443 | inulin | - | builds acid from |
| 68371 | 27082 | trehalose | - | builds acid from |
| 68371 | 17992 | sucrose | - | builds acid from |
| 68371 | 28053 | melibiose | - | builds acid from |
| 68371 | 18305 | arbutin | - | builds acid from |
| 68371 | 27613 | amygdalin | - | builds acid from |
| 68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
| 68371 | 17924 | D-sorbitol | - | builds acid from |
| 68371 | 16899 | D-mannitol | - | builds acid from |
| 68371 | 17268 | myo-inositol | - | builds acid from |
| 68371 | 16813 | galactitol | - | builds acid from |
| 68371 | 62345 | L-rhamnose | - | builds acid from |
| 68371 | 17266 | L-sorbose | - | builds acid from |
| 68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
| 68371 | 15963 | ribitol | - | builds acid from |
| 68371 | 65328 | L-xylose | - | builds acid from |
| 68371 | 65327 | D-xylose | - | builds acid from |
| 68371 | 16988 | D-ribose | - | builds acid from |
| 68371 | 30849 | L-arabinose | - | builds acid from |
| 68371 | 17108 | D-arabinose | - | builds acid from |
| 68371 | 17113 | erythritol | - | builds acid from |
| 68371 | 17754 | glycerol | - | builds acid from |
| @ref | value | activity | ec |
|---|---|---|---|
| 68382 | alkaline phosphatase | + | 3.1.3.1 |
| 68382 | esterase (C 4) | - | |
| 68382 | esterase lipase (C 8) | - | |
| 68382 | lipase (C 14) | - | |
| 68382 | leucine arylamidase | + | 3.4.11.1 |
| 68382 | valine arylamidase | - | |
| 68382 | cystine arylamidase | - | 3.4.11.3 |
| 68382 | trypsin | - | 3.4.21.4 |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 |
| 68382 | acid phosphatase | + | 3.1.3.2 |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 |
| 68382 | beta-galactosidase | - | 3.2.1.23 |
| 68382 | beta-glucuronidase | - | 3.2.1.31 |
| 68382 | alpha-glucosidase | + | 3.2.1.20 |
| 68382 | beta-glucosidase | + | 3.2.1.21 |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68382 | alpha-mannosidase | - | 3.2.1.24 |
| 68382 | alpha-fucosidase | - | 3.2.1.51 |
| 121602 | oxidase | - | |
| 121602 | alcohol dehydrogenase | - | 1.1.1.1 |
| 121602 | catalase | - | 1.11.1.6 |
| 121602 | lysine decarboxylase | - | 4.1.1.18 |
| 121602 | ornithine decarboxylase | - | 4.1.1.17 |
| @ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121602 | - | + | - | - | - | + | - | - | - | - | + | + | - | - | - | + | + | - | - | - |
| @ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8723 | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| 8723 | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| 121602 | - | - | - | - | - | - | - | - | - | - | +/- | +/- | +/- | - | - | - | - | - | - | - | - | +/- | - | - | +/- | +/- | +/- | +/- | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - |
| @ref | sample type | isolation date |
|---|---|---|
| 8723 | silage | |
| 49241 | Silage | |
| 67770 | Silage | |
| 121602 | Environment, Silage | 1962 |
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Animal feed |
| #Engineered | #Biodegradation | #Composting |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 8723 | 1 | Risk group (German classification) |
| 121602 | 1 | Risk group (French classification) |
| @ref | description | assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | score | IMG accession |
|---|---|---|---|---|---|---|---|
| 66792 | ASM799020v1 assembly for Pediococcus parvulus NBRC 100673 | contig | GCA_007990205 | 54062.13 | 54062 | 50.08 | |
| 66792 | ASM1465121v1 assembly for Pediococcus parvulus JCM 5889 | contig | GCA_014651215 | 54062.14 | 54062 | 58.03 | |
| 66792 | ASM143726v1 assembly for Pediococcus parvulus | scaffold | GCA_001437265 | 54062.4 | 54062 | 2775507230 |
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Lactobacillus reuteri ATCC 19371 16S ribosomal RNA gene, partial sequence | AF429538 | 515 | nuccore | 1598 |
| 20218 | Lactobacillus reuteri strain ATCC 19371 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF429625 | 516 | nuccore | 1598 |
| 20218 | Pediococcus parvulus DNA for 16S ribosomal RNA, partial sequence | D88528 | 1447 | nuccore | 54062 |
| 20218 | Pediococcus parvulus gene for 16S rRNA, partial sequence, strain: NBRC 100673 | AB681216 | 1501 | nuccore | 54062 |
| 67770 | Pediococcus parvulus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5889 | LC071841 | 1474 | nuccore | 54062 |
| 67770 | Pediococcus parvulus gene for 16S ribosomal RNA, partial sequence, strain: JCM 20450 | LC258155 | 1511 | nuccore | 54062 |
| 124043 | Pediococcus parvulus strain JCM 5889 16S ribosomal RNA gene, partial sequence. | MT760651 | 1383 | nuccore | 54062 |
| @ref | GC-content | method |
|---|---|---|
| 8723 | 41.6 | |
| 67770 | 41.6 | thermal denaturation, midpoint method (Tm) |
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 94.362 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 88.81 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.376 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.344 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 58 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 53 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 80.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.1 |
@ref: 8723
culture collection no.: CCUG 28439, CCM 3450, DSM 20332, ATCC 19371, NCDO 1634, NCIB 9447, JCM 20450, BCRC 12575, CECT 813, CGMCC 1.2694, CIP 102262, IAM 12291, IFO 12235, JCM 5889, KCTC 3615, LMG 11486, NBRC 100673, NBRC 12235, NCIMB 9447, VKM B-1604
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| Dietary Fermented Soy Extract and Oligo-Lactic Acid Alleviate Chronic Kidney Disease in Mice via Inhibition of Inflammation and Modulation of Gut Microbiota. | He LX, Abdolmaleky HM, Yin S, Wang Y, Zhou JR. | Nutrients | 2020 | 10.3390/nu12082376 | Pathogenicity | 32784477 | Inflammation, Stem Cells, Chronic Kidney Disease, Gut Microbiota, Fermented Soybean, Oligo-lactic Acid, administration & dosage, chemistry, Dietary Supplements, drug therapy, drug effects, Glycine max | |
| Effect of cereal fermentation and carbohydrase supplementation on growth, nutrient digestibility and intestinal microbiota in liquid-fed grow-finishing pigs. | Torres-Pitarch A, Gardiner GE, Cormican P, Rea M, Crispie F, O'Doherty JV, Cozannet P, Ryan T, Cullen J, Lawlor PG. | Sci Rep | 2020 | 10.1038/s41598-020-70443-x | Metabolism | 32792575 | growth & development, metabolism, administration & dosage, analysis, Dietary Supplements, Gastrointestinal Microbiome, metabolism | |
| Microbial Diversity of Fermented Greek Table Olives of Halkidiki and Konservolia Varieties from Different Regions as Revealed by Metagenomic Analysis. | Argyri K, Doulgeraki AI, Manthou E, Grounta A, Argyri AA, Nychas GE, Tassou CC. | Microorganisms | 2020 | 10.3390/microorganisms8081241 | 32824085 | Ngs, Table Olives, Microbiological Analysis, Metagenomic Analysis, Greek-style Fermentation, Halkidiki Olives, Konservolia Olives, Spanish-style Fermentation | ||
| In ovo Administration of Defined Lactic Acid Bacteria Previously Isolated From Adult Hens Induced Variations in the Cecae Microbiota Structure and Enterobacteriaceae Colonization on a Virulent Escherichia coli Horizontal Infection Model in Broiler Chickens. | Arreguin-Nava MA, Graham BD, Adhikari B, Agnello M, Selby CM, Hernandez-Velasco X, Vuong CN, Solis-Cruz B, Hernandez-Patlan D, Latorre JD, Tellez G, Hargis BM, Tellez-Isaias G. | Front Vet Sci | 2020 | 10.3389/fvets.2020.00489 | 32974395 | Broiler, Probiotic, Escherichia Coli, In Ovo, Hatcher | ||
| High-Throughput Sequencing Approach to Analyze the Effect of Aging Time and Barrel Usage on the Microbial Community Composition of Red Wines. | Kioroglou D, Mas A, Portillo MC. | Front Microbiol | 2020 | 10.3389/fmicb.2020.562560 | 33013793 | High-throughput Sequencing, Bacterial Communities, Fungal Communities, Oak Barrels, Aged Wine | ||
| Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. | Leech J, Cabrera-Rubio R, Walsh AM, Macori G, Walsh CJ, Barton W, Finnegan L, Crispie F, O'Sullivan O, Claesson MJ, Cotter PD. | mSystems | 2020 | 10.1128/msystems.00522-20 | Genetics | 33172966 | Diversity, Fermented, Shotgun Metagenomics | |
| Functional Properties and Sustainability Improvement of Sourdough Bread by Lactic Acid Bacteria. | Fraberger V, Ammer C, Domig KJ. | Microorganisms | 2020 | 10.3390/microorganisms8121895 | 33265943 | Lactic acid bacteria, Spoilage, Molds, Sourdough, Bacilli | ||
| Effect of Cyberlindnera jadinii yeast as a protein source on intestinal microbiota and butyrate levels in post-weaning piglets. | Iakhno S, Umu OCO, Hakenasen IM, Akesson CP, Mydland LT, Press CM, Sorum H, Overland M. | Anim Microbiome | 2020 | 10.1186/s42523-020-00031-x | Phylogeny | 33499966 | Butyrate, Gut, 16s Rrna Gene Sequencing, Lactobacillus Spp., Crypt Depth, Cyberlindnera Jadinii, Pig Microbiota, Yeast Diet | |
| Evaluation of an O2-Substituted (1-3)-beta-D-Glucan, Produced by Pediococcus parvulus 2.6, in ex vivo Models of Crohn's Disease. | Notararigo S, Varela E, Otal A, Cristobo I, Antolin M, Guarner F, Prieto A, Lopez P. | Front Microbiol | 2021 | 10.3389/fmicb.2021.621280 | 33613490 | Lactic acid bacteria, Immunomodulation, Bacterial Exopolysaccharides, Crohn´S Disease Anti-Inflammatory Effect | ||
| Innovative Fermented Beverages Made with Red Rice, Barley, and Buckwheat. | Cardinali F, Osimani A, Milanovic V, Garofalo C, Aquilanti L. | Foods | 2021 | 10.3390/foods10030613 | 33805698 | Fermentation, Barley, Lactic acid bacteria, Buckwheat, Beverages, Red Rice | ||
| Effect of Lactic Acid Bacteria Strains on the Growth and Aflatoxin Production Potential of Aspergillus parasiticus, and Their Ability to Bind Aflatoxin B1, Ochratoxin A, and Zearalenone in vitro. | Moller COA, Freire L, Rosim RE, Margalho LP, Balthazar CF, Franco LT, Sant'Ana AS, Corassin CH, Rattray FP, de Oliveira CAF. | Front Microbiol | 2021 | 10.3389/fmicb.2021.655386 | 33967993 | Aspergillus, Microbial interaction, lactobacillus, Mycotoxin Reduction, Mycotoxin Inhibition, Mycotoxigenic Fungus | ||
| Use of metabarcoding and source tracking to identify desirable or spoilage autochthonous microorganism sources during black olive fermentations. | Penland M, Mounier J, Pawtowski A, Treguer S, Deutsch SM, Coton M. | Food Res Int | 2021 | 10.1016/j.foodres.2021.110344 | 34053540 | Lactic acid bacteria, spontaneous fermentation, Metagenetics, Sourcetracker, Quality Defects, Process Environment, Olea | ||
| Metabolome and Microbiota Analysis Reveals the Conducive Effect of Pediococcus acidilactici BCC-1 and Xylan Oligosaccharides on Broiler Chickens. | Wu Y, Lei Z, Wang Y, Yin D, Aggrey SE, Guo Y, Yuan J. | Front Microbiol | 2021 | 10.3389/fmicb.2021.683905 | 34122394 | Broiler, Microbiota, metabolome, Pediococcus Acidilactici, Xylan Oligosaccharides | ||
| Isolation and Characterization of Lactic Acid Bacteria and Yeasts from Typical Bulgarian Sourdoughs. | Petkova M, Stefanova P, Gotcheva V, Angelov A. | Microorganisms | 2021 | 10.3390/microorganisms9071346 | 34206198 | Yeast, Lactic acid bacteria, Microbial Characterization, Bulgarian Sourdoughs | ||
| Anti-Tuberculosis Activity of Pediococcus acidilactici Isolated from Young Radish Kimchi against Mycobacterium tuberculosis. | Yoon Y, Seo H, Kim S, Lee Y, Rahim MA, Lee S, Song HY. | J Microbiol Biotechnol | 2021 | 10.4014/jmb.2107.07044 | Pathogenicity | 34584040 | Mycobacterium tuberculosis, Probiotics, Microbiome, Pediococcus Acidilactici, Anti-tuberculosis Effect, drug effects, microbiology, physiology, microbiology | |
| The Fermented Soy Product ImmuBalanceTM Suppresses Airway Inflammation in a Murine Model of Asthma. | Kadotani H, Asai K, Miyamoto A, Iwasaki K, Kawai T, Nishimura M, Tohda M, Okamoto A, Sato K, Yamada K, Ijiri N, Watanabe T, Kawaguchi T. | Nutrients | 2021 | 10.3390/nu13103380 | Pathogenicity | 34684380 | Asthma, Eosinophilic inflammation, Th2 Cytokines, Fermented Soy Product, pathology, therapy, pathology, Fermented Foods, chemistry | |
| Mucosa-adherent Pediococcus Pentosaceus I44 isolated from healthy human and effect of oleic acid on its probiotic properties. | Vasudevan L, V J, M S, Ts C. | Curr Res Microb Sci | 2021 | 10.1016/j.crmicr.2021.100058 | 34841348 | Mucosa, Biopsy, Gut Microbiota, Autochthonous, Pediococcus Pentosaceus | ||
| Evaluating comparative beta-glucan production aptitude of Saccharomyces cerevisiae, Aspergillus oryzae, Xanthomonas campestris, and Bacillus natto. | Utama GL, Dio C, Sulistiyo J, Yee Chye F, Lembong E, Cahyana Y, Kumar Verma D, Thakur M, Patel AR, Singh S. | Saudi J Biol Sci | 2021 | 10.1016/j.sjbs.2021.07.051 | 34866975 | Fermentation, Microorganisms, Submerged, A. Oryzae | ||
| Microbial Communities and Physiochemical Properties of Four Distinctive Traditionally Fermented Vegetables from North China and Their Influence on Quality and Safety. | Liang T, Xie X, Wu L, Li L, Li H, Xi Y, Feng Y, Xue L, Chen M, Chen X, Zhang J, Ding Y, Wu Q. | Foods | 2021 | 10.3390/foods11010021 | 35010147 | Safety, Quality, Microbial communities, Fermented Vegetables, Physiochemical Properties | ||
| Histamine Contents in Raw Long-ripening Meat Products Commercially Available in Poland. | Michalski M, Pawul-Gruba M, Madejska A. | J Vet Res | 2021 | 10.2478/jvetres-2021-0062 | 35112002 | Histamine, Dry Meat Products, High-Performance Liquid Chromatography With Diode Array, Long-Ripening Meat Products | ||
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| Fermented Food in Asthma and Respiratory Allergies-Chance or Failure? | Debinska A, Sozanska B. | Nutrients | 2022 | 10.3390/nu14071420 | 35406034 | Allergy, Diet, Asthma, Primary Prevention, Fermented Food, Asthma, Hypersensitivity, Food Hypersensitivity, Fermented Foods | ||
| Use of the beta-Glucan-Producing Lactic Acid Bacteria Strains Levilactobacillus brevis and Pediococcus claussenii for Sourdough Fermentation-Chemical Characterization and Chemopreventive Potential of In Situ-Enriched Wheat and Rye Sourdoughs and Breads. | Schlormann W, Bockwoldt JA, Hubner SM, Wittwer E, Reiners S, Lorkowski S, Dawczynski C, Ehrmann MA, Glei M. | Nutrients | 2022 | 10.3390/nu14071510 | 35406123 | Lactic acid bacteria, Colon cancer, Chemoprevention, bread, Sourdough, beta-Glucans, Lactobacillales, Fermented Foods | ||
| Anticancer Potential of Post-Fermentation Media and Cell Extracts of Probiotic Strains: An In Vitro Study. | Nowak A, Zaklos-Szyda M, Rosicka-Kaczmarek J, Motyl I. | Cancers (Basel) | 2022 | 10.3390/cancers14071853 | 35406625 | Apoptosis, Cancer, Reactive oxygen species, Lactic acid bacteria, Probiotics, Anticancer activity, Caco-2, mitochondrial membrane potential, Postbiotics | ||
| Degradation of Ochratoxin A by a UV-Mutated Aspergillus niger Strain. | Zou D, Ji J, Ye Y, Yang Y, Yu J, Wang M, Zheng Y, Sun X. | Toxins (Basel) | 2022 | 10.3390/toxins14050343 | Pathogenicity | 35622590 | Aspergillus niger, Cytotoxicity, Ochratoxin A, Detoxification, Degradation Products, Aspergillus niger, Mycotoxins | |
| Heterologous expression of pediocin/papA in Bacillus subtilis. | Wang G, Guo Z, Zhang X, Wu H, Bai X, Zhang H, Hu R, Han S, Pang Y, Gao Z, Yan L, Huang C, Zhang L, Pan C, Liu X. | Microb Cell Fact | 2022 | 10.1186/s12934-022-01829-x | 35643507 | Bacillus subtilis, Listeria monocytogenes, Lactobacillus plantarum, Pediocin, Microbial Cell Factory, Papa, Bacillus subtilis, Bacteriocins | ||
| How Microbiome Composition Correlates with Biochemical Changes during Sauerkraut Fermentation: a Focus on Neglected Bacterial Players and Functionalities. | Tlais AZA, Lemos Junior WJF, Filannino P, Campanaro S, Gobbetti M, Di Cagno R. | Microbiol Spectr | 2022 | 10.1128/spectrum.00168-22 | 35699432 | Microbiota, Phenolics Profile, Sauerkraut Fermentation, Secundilactobacillus Malefermentans, Brassica, Microbiota | ||
| AI-2/LuxS Quorum Sensing System Promotes Biofilm Formation of Lactobacillus rhamnosus GG and Enhances the Resistance to Enterotoxigenic Escherichia coli in Germ-Free Zebrafish. | Deng Z, Hou K, Valencak TG, Luo XM, Liu J, Wang H. | Microbiol Spectr | 2022 | 10.1128/spectrum.00610-22 | 35700135 | Zebrafish, Biofilm, Anti-inflammatory, Quorum sensing, Lactobacillus Rhamnosus Gg, Luxs Mutant, Enterotoxigenic Escherichia coli, Lacticaseibacillus rhamnosus | ||
| Pediococcus pentosaceus IMI 507025 genome sequencing data. | Nikodinoska I, Makkonen J, Blande D, Moran C. | Data Brief | 2022 | 10.1016/j.dib.2022.108446 | Genetics | 35864877 | Lactic acid bacteria, Antimicrobial resistance, Microbial Genome Sequencing, Search For Genes Of Concern | |
| Evaluation of the Safety and Ochratoxin A Degradation Capacity of Pediococcus pentosaceus as a Dietary Probiotic with Molecular Docking Approach and Pharmacokinetic Toxicity Assessment. | Park S, Koo J, Kim B, Pushparaj K, Malaisamy A, Liu WC, Balasubramanian B. | Int J Mol Sci | 2022 | 10.3390/ijms23169062 | 36012326 | Probiotics, Ochratoxin A, Toxicity Assessment, Biodetoxification, Pediococcus Sp., Probiotics, Pediococcus pentosaceus | ||
| Prebiotics enhance persistence of fermented-food associated bacteria in in vitro cultivated fecal microbial communities. | Christensen CM, Kok CR, Auchtung JM, Hutkins R. | Front Microbiol | 2022 | 10.3389/fmicb.2022.908506 | 36118245 | Fermentation, Bifidobacterium, Lactic acid bacteria, Prebiotics, Fermented Foods, Gi Microbiome | ||
| Effects of a synbiotic as an antibiotic alternative on behavior, production performance, cecal microbial ecology, and jejunal histomorphology of broiler chickens under heat stress. | Mohammed A, Hu J, Murugesan R, Cheng HW. | PLoS One | 2022 | 10.1371/journal.pone.0274179 | 36170274 | Escherichia coli Infections, Heat Stress Disorders, Synbiotics | ||
| Protective effect of Lactococcus laudensis and Pediococcus parvulus against neuropathy due to amyloid-beta in Caenorhabditis elegans. | Komura T, Aoki M, Kotoura S, Nishikawa Y. | Biomed Pharmacother | 2022 | 10.1016/j.biopha.2022.113769 | 36271552 | Lactic acid bacteria, Caenorhabditis elegans, Neuropathy, Caenorhabditis elegans, Alzheimer Disease | ||
| Microbial and metabolic characterization of organic artisanal sauerkraut fermentation and study of gut health-promoting properties of sauerkraut brine. | Gaudioso G, Weil T, Marzorati G, Solovyev P, Bontempo L, Franciosi E, Bertoldi L, Pedrolli C, Tuohy KM, Fava F. | Front Microbiol | 2022 | 10.3389/fmicb.2022.929738 | 36312966 | Lactic acid bacteria, Gut Barrier, Sauerkraut, Fermented Food, Microbial Metabolites, Food Microbiota | ||
| The Supplementation of FloraMax-B11 Did Not Affect the Bile Acid Neosynthesis and the Enterohepatic Circulation in Broiler Chickens. | Kpodo KR, Chaudhari A, Schreier LL, Miska KB, Proszkowiec-Weglarz M. | Animals (Basel) | 2022 | 10.3390/ani12212901 | 36359025 | Bile acid, Probiotic, Broiler chickens, Enterohepatic Circulation | ||
| Antagonistic Activity of Potentially Probiotic Lactic Acid Bacteria against Honeybee (Apis mellifera L.) Pathogens. | Leska A, Nowak A, Szulc J, Motyl I, Czarnecka-Chrebelska KH. | Pathogens | 2022 | 10.3390/pathogens11111367 | 36422618 | Honeybee, Lactic acid bacteria, Probiotics, Apis mellifera L., Antagonistic activity, Melissococcus Plutonius, Paenibacillus Spp., Honeybee Pathogens | ||
| Microbial toxins in fermented foods: health implications and analytical techniques for detection. | Fayyaz K, Nawaz A, Olaimat AN, Akram K, Farooq U, Fatima M, Siddiqui SA, Rana IS, Mahnoor M, Shahbaz HM. | J Food Drug Anal | 2022 | 10.38212/2224-6614.3431 | Pathogenicity | 36753631 | Toxins, Biological, Fermented Foods | |
| Bioactive nutraceuticals oligo-lactic acid and fermented soy extract alleviate cognitive decline in mice in part via anti-neuroinflammation and modulation of gut microbiota. | Abdolmaleky HM, Sheng Y, Zhou JR. | Front Nutr | 2023 | 10.3389/fnut.2023.1116278 | Pathogenicity | 36969810 | Cognition, Microbiota, neuroinflammation, Gene Expression, Nutraceuticals, Oligo-lactic Acid, Fermented Soy Extract | |
| 16S-rRNA-Based Metagenomic Profiling of the Bacterial Communities in Traditional Bulgarian Sourdoughs. | Baev V, Apostolova E, Gotcheva V, Koprinarova M, Papageorgiou M, Rocha JM, Yahubyan G, Angelov A. | Microorganisms | 2023 | 10.3390/microorganisms11030803 | Genetics | 36985376 | Bulgaria, Metagenomics, Bacterial Communities, Lactic Acid Bacteria (Lab), Traditional Sourdough | |
| Identification and Selection of Prospective Probiotics for Enhancing Gastrointestinal Digestion: Application in Pharmaceutical Preparations and Dietary Supplements. | Cappello C, Tlais AZA, Acin-Albiac M, Lemos Junior WJF, Pinto D, Filannino P, Rinaldi F, Gobbetti M, Di Cagno R. | Nutrients | 2023 | 10.3390/nu15061306 | 36986037 | Digestibility, Lactic acid bacteria, Food Functionality, Anti-nutritional Compounds, Scoring Approach, Probiotics, Lactobacillales | ||
| Microbial and Biochemical Profile of Different Types of Greek Table Olives. | Mougiou N, Tsoureki A, Didos S, Bouzouka I, Michailidou S, Argiriou A. | Foods | 2023 | 10.3390/foods12071527 | Phylogeny | 37048348 | 16S rRNA, 18S rRNA, Microbiome, Oleuropein, Table Olives, Oleocanthal | |
| Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. | Manara S, Selma-Royo M, Huang KD, Asnicar F, Armanini F, Blanco-Miguez A, Cumbo F, Golzato D, Manghi P, Pinto F, Valles-Colomer M, Amoroso L, Corrias MV, Ponzoni M, Raffaeta R, Cabrera-Rubio R, Olcina M, Pasolli E, Collado MC, Segata N. | Curr Biol | 2023 | 10.1016/j.cub.2023.04.011 | 37116481 | Traditional Fermented Food, Infant Microbiome, Strain Sharing, Mother-infant Strain Sharing, Non-westernized Microbiome Signatures, Rural Microbiome, Microbiota, Gastrointestinal Microbiome | ||
| The microbiota of Mozzarella di Bufala Campana PDO cheese: a study across the manufacturing process. | Levante A, Bertani G, Marrella M, Mucchetti G, Bernini V, Lazzi C, Neviani E. | Front Microbiol | 2023 | 10.3389/fmicb.2023.1196879 | Phylogeny | 37649628 | Lactic acid bacteria, Microbial community, Lactobacillus Spp., 16S Rrna Amplicon Sequencing, Streptococcus Spp., Fermented Food, Natural Whey Starter, Mozzarella Di Bufala Campana Pdo | |
| Essential Oils and Their Combination with Lactic Acid Bacteria and Bacteriocins to Improve the Safety and Shelf Life of Foods: A Review. | Bukvicki D, D'Alessandro M, Rossi S, Siroli L, Gottardi D, Braschi G, Patrignani F, Lanciotti R. | Foods | 2023 | 10.3390/foods12173288 | 37685221 | Food preservatives, Biocontrol agents, Food safety, Natural Antimicrobials | ||
| Sour Beer as Bioreservoir of Novel Craft Ale Yeast Cultures. | Nasuti C, Ruffini J, Sola L, Di Bacco M, Raimondi S, Candeliere F, Solieri L. | Microorganisms | 2023 | 10.3390/microorganisms11092138 | 37763982 | Saccharomyces cerevisiae, Hybrid, Dextrin, Saccharomyces Uvarum, Pichia Membranifaciens, Sour Beer, Sta1 Gene, Craft Brewing | ||
| Tasting of traditional Polish fermented cucumbers: Microbiology, morpho-textural features, and volatilome. | Cardinali F, Botta C, Harasym J, Reale A, Ferrocino I, Boscaino F, Orkusz A, Milanovic V, Garofalo C, Rampanti G, Aquilanti L, Osimani A. | Food Res Int | 2024 | 10.1016/j.foodres.2023.113851 | 38225126 | Antioxidant capacity, VOCs, Pediococcus, Total Phenolic Content, Acidification Performance, Metataxonomic Analysis, Lactiplantibacillus, Cucumis sativus, Salts | ||
| Dynamic changes in microbial communities and flavor during different fermentation stages of proso millet Baijiu, a new product from Shanxi light-flavored Baijiu. | Zhao J, Gao Z. | Front Microbiol | 2024 | 10.3389/fmicb.2024.1333466 | 38318340 | Fermentation, Flavor, Microbial community, Proso Millet, Baijiu | ||
| Bacteriocins against biogenic amine-accumulating lactic acid bacteria in cheese: Nisin A shows the broadest antimicrobial spectrum and prevents the formation of biofilms. | Villarreal LA, Ladero V, Sarquis A, Martinez B, Del Rio B, Alvarez MA. | J Dairy Sci | 2024 | 10.3168/jds.2023-24358 | 38395395 | Histamine, putrescine, Food safety, Tyramine, Biofilms, Biogenic Amines, Nisin, Bacteriocins, Cheese, Lactobacillales | ||
| Ochratoxin A biodegradation by Agaricus campestris and statistical optimization of cultural variables. | Soylemez T, Yamac M, Eninanc AB, Yildiz Z. | Food Sci Biotechnol | 2024 | 10.1007/s10068-023-01417-8 | 38440684 | Agaricus campestris, Biodegradation, Ochratoxin A, Statistical Optimization | ||
| Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples. | Buetas E, Jordan-Lopez M, Lopez-Roldan A, D'Auria G, Martinez-Priego L, De Marco G, Carda-Dieguez M, Mira A. | BMC Genomics | 2024 | 10.1186/s12864-024-10213-5 | Phylogeny | 38528457 | Taxonomy, Sequencing, 16S rRNA gene, Microbiome, Illumina, Pacbio, Microbiota | |
| Comparative assessment of Riesling wine fault development by the electronic tongue and a sensory panel. | Potter RI, Warren CA, Lee J, Ross CF. | J Food Sci | 2024 | 10.1111/1750-3841.17036 | 38532705 | white wine, Nondestructive, Flaws, Taste, Wine | ||
| Lacto-fermented garlic handcrafted in the Lower Silesia Region (Poland): Microbial diversity, morpho-textural traits, and volatile compounds. | Cardinali F, Botta C, Harasym J, Ferrocino I, Reale A, Boscaino F, Di Renzo T, Milanovic V, Garofalo C, Rampanti G, Aquilanti L, Osimani A. | Food Res Int | 2024 | 10.1016/j.foodres.2024.114484 | Biotechnology | 38823870 | Lactic acid bacteria, Antioxidant activity, Starter cultures, Pediococcus, Adjunct Cultures, Lacticaseibacillus, Levilactobacillus, Garlic, Food Microbiology, Fermentation, Gas Chromatography-Mass Spectrometry, Solid Phase Microextraction, Volatile Organic Compounds | |
| Role of Quinoa (Chenopodium quinoa Willd) and Chickpea (Cicer arietinum L.) Ratio in Physicochemical Stability and Microbiological Quality of Fermented Plant-Based Beverages during Storage. | Hurtado-Murillo J, Franco W, Contardo I. | Foods | 2024 | 10.3390/foods13152462 | 39123653 | Storage, Microbiological Quality, Physicochemical Stability, Plant-based Beverages, Quinoa-to-chickpea Ratio | ||
| Biochemical and Structural Characterization of a Novel Psychrophilic Laccase (Multicopper Oxidase) Discovered from Oenococcus oeni 229 (ENOLAB 4002). | Olmeda I, Paredes-Martinez F, Sendra R, Casino P, Pardo I, Ferrer S. | Int J Mol Sci | 2024 | 10.3390/ijms25158521 | 39126090 | Phenols, Wine, Biogenic amines, Oenococcus oeni, Psychrophilic Laccase, Laccase, Oenococcus | ||
| Fermentation starters and bacteriocins as biocontrol strategies for table olives preservation: a mini-review. | Rus-Fernandez P, Fuentes A. | J Sci Food Agric | 2025 | 10.1002/jsfa.13874 | 39248037 | Bacteriocin, Biopreservation, Table Olives, Starter, Lactobacillaceae, Olea, Bacteriocins, Food Preservation, Biological Control Agents | ||
| Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. | Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. | mSystems | 2024 | 10.1128/msystems.00537-24 | Genetics | 39287380 | Comparative genomics, Microbiome, Acetic Acid Bacteria, Strain Diversity, Synthetic Communities, Sourdough Starter, Acetic Acid, Genomics, Bread, Microbiota | |
| Microbiota-gut-brain axis in health and neurological disease: Interactions between gut microbiota and the nervous system. | He Y, Wang K, Su N, Yuan C, Zhang N, Hu X, Fu Y, Zhao F. | J Cell Mol Med | 2024 | 10.1111/jcmm.70099 | 39300699 | Neurotransmitter, Nervous system, Gut Microbiota, Nervous System Diseases, Gastrointestinal Microbiome, Brain-Gut Axis | ||
| Detoxification of Acrylamide by Potentially Probiotic Strains of Lactic Acid Bacteria and Yeast. | Maher A, Miskiewicz K, Rosicka-Kaczmarek J, Nowak A. | Molecules | 2024 | 10.3390/molecules29204922 | 39459290 | DNA damage, Yeast, Lactic acid bacteria, Cell viability, MTT assay, Probiotics, Detoxification, Acrylamide, bioaccumulation, Acrylamide, Probiotics, Lactobacillales | ||
| Lactic acid bacteria: A sustainable solution against phytopathogenic agents. | Saragoca A, Canha H, Varanda CMR, Materatski P, Cordeiro AI, Gama J. | Environ Microbiol Rep | 2024 | 10.1111/1758-2229.70021 | 39623703 | Plant Diseases | ||
| Revisiting the role of pathogen diversity and microbial interactions in honeybee susceptibility and treatment of Melissococcus plutonius infection. | Mallory E, Freeze G, Daisley BA, Allen-Vercoe E. | Front Vet Sci | 2024 | 10.3389/fvets.2024.1495010 | 39748868 | Probiotics, Clonal Complex, Secondary Invaders, Melissococcus Plutonius, European Foulbrood, Microbial Ecological Interactions | ||
| Screening and Selection of Native Lactic Acid Bacteria Isolated from Chilean Grapes. | Vargas-Luna C, Godoy L, Benavides S, Ceppi de Lecco C, Urtubia A, Franco W. | Foods | 2025 | 10.3390/foods14010143 | 39796433 | Malolactic fermentation, Starter Culture, Native Bacteria, Levilactobacillus Brevis | ||
| Early Oxidation Detection in White Wine by Electronic Tongue: A Preliminary Study. | Potter RI, Lee J, Ross CF. | Food Sci Nutr | 2025 | 10.1002/fsn3.70366 | 40444112 | Storage, Sensory, Chardonnay, E?tongue | ||
| Sustained in-ovo and in-feed probiotic supplementation promotes embryo development and post-hatch performance in broilers. | Ren Y, Muyyarikkandy MS, Gao M, Lu S, Reddyvari R, Mathew E, Kuttappan D, Kosuri P, Amalaradjou MA. | Poult Sci | 2025 | 10.1016/j.psj.2025.105395 | 40499240 | Probiotic, Broilers, Embryo growth, Post-hatch Performance, Sustained Supplementation, Chickens, Lactobacillus, Embryonic Development, Probiotics | ||
| Draft genome sequence of five strains of family Lactobacillaceae isolated from a seasoning liquid of Hiroshimana old pickle. | Suenaga T, Shimura E, Shema JDD, Gotoh T, Nishijima W, Nakai S. | Microbiol Resour Announc | 2025 | 10.1128/mra.00521-25 | Genetics | 40905663 | Lactobacillaceae, Draft Genome, Pediococcus Parvulus, Pediococcus Ethanolidurans, Lactiplantibacillus Plantarum, Hiroshimana Old Pickle, Companilactobacillus Alimentarius | |
| Comparative Optimization of Culture Media for Enhanced beta-Glucan Production by Limosilactobacillus fermentumSH2 (MW897962) and Its Bioactivity Assessment. | Abedelmaksoud TG, Allaith SA, Altemimi AB, Abdel-Aziz ME, Thabit ZA, Hesarinejad MA, Mohamed RM. | Food Sci Nutr | 2025 | 10.1002/fsn3.70960 | 40979577 | Bioactivity, RSM, Limosilactobacillus Fermentum | ||
| Comparative analysis of metagenomics between high- and medium-temperature daqu, and microbial succession in Jiang-Nong Jianxiang Baijiu fermentation. | Cao L, Sun H, Wang Y, Wei Z, Zhang J, Wang Y, Yan J, Zhu Y, Cheng N, He S, Liu X, Li T, Wang M, Li E. | BMC Genomics | 2025 | 10.1186/s12864-025-12045-3 | Genetics | 41023790 | Microbiota, Daqu, Metagenomic Sequencing, Compound-Flavor Baijiu, Jiang-nong Jianxiang Baijiu, Bacteria, Fermentation, Alcoholic Beverages, Metagenomics, Microbiota |
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8723 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20332) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20332 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 38095 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/13929 | ||||
| 49241 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 28439) | https://www.ccug.se/strain?id=28439 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 68371 | Automatically annotated from API 50CH acid | |||||
| 68382 | Automatically annotated from API zym | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 121602 | Curators of the CIP | Collection of Institut Pasteur (CIP 102262) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102262 | |||
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | |||
| 126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer | 10.1093/database/baaf059 | StrainInfo—the central database for linked microbial strain identifiers |
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