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BacDive ID 6498
Type strain
Culture col. no. DSM 13273 ATCC BAA-171 NRRL B-14768 CCUG 45396 CIP 106786 JCM 11125 NCIMB 14068 2 more
NCBI tax ID(s) 337330
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 4986

BacDive-ID: 6498

DSM-Number: 13273

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Lactiplantibacillus plantarum DSM 13273 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from jojoba meal fermentation.

NCBI tax id

  • NCBI tax id: 337330
  • Matching level: subspecies

strain history

@refhistory
4986<- NRRL <- J.L. Swezey
67770L. K. Nakamura NRRL B-14768.
121861CIP <- 2000, K.L. Nakamura, USDA, Peoria, Illinois, USA, Lactobacillus arizonensis: strain NRRL B-14768 <- J.L. Swezey

doi: 10.13145/bacdive6498.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactiplantibacillus
  • species: Lactiplantibacillus plantarum
  • full scientific name: Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020

  • synonyms

    @refsynonym
    20215Lactobacillus arizonensis
    20215Streptobacterium plantarum
    20215Lactobacillus plantarum

@ref: 4986

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactiplantibacillus

species: Lactiplantibacillus plantarum subsp. plantarum

full scientific name: Lactiplantibacillus plantarum subsp. plantarum (Orla-Jensen 1919) Zheng et al. 2020

type strain: no

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
121861positiverod-shapedno
125438positive92.708
125439positive95.1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4986MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38642MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121861CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperature
4986positivegrowth37
38642positivegrowth37
56759positivegrowth37
67770positivegrowth30
121861positivegrowth15-45
121861nogrowth10

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
56759anaerobe
121861facultative anaerobe
125439microaerophile96.4

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12186117632nitrate-reduction
12186116301nitrite-reduction
12186117632nitrate+respiration
68371Potassium 5-ketogluconate-builds acid from
6837127613amygdalin+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
683716731melezitose+builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
6837118305arbutin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837117924D-sorbitol+builds acid from
6837116899D-mannitol+builds acid from
6837116813galactitol-builds acid from
6837117266L-sorbose+builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

antibiotic resistance

  • @ref: 121861
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 121861
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 121861
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68382alpha-fucosidase+3.2.1.51
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121861oxidase-
121861alcohol dehydrogenase-1.1.1.1
121861catalase-1.11.1.6
121861lysine decarboxylase-4.1.1.18
121861ornithine decarboxylase-4.1.1.17
121861urease-3.5.1.5
68382alpha-galactosidase-3.2.1.22

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121861-+++-+++--++-+-+++-+

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
4986----++----+++++---+++-+++++++++++-++---++------+/---
4986----++----++++++--+++-+++++++++++-++---++------+--
4986----++----++++++/---+++-++++/-+++++++-++---++----+/--+--
121861---++----++++++/--+/-+++/-++++++++++++-++/----++-+----+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
4986jojoba meal fermentationUSA, ArizonaUSAUSANorth America
56759Jojoba meal fermentationUSAUSANorth America
67770Jojoba meal
121861Fermenting jojoba mealArizonaUnited States of AmericaUSANorth America1990

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Host#Plants#Shrub (Scrub)

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
4986yes, in single cases1Risk group (German classification)
1218611Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus arizonensis partial 16S rRNA gene, strain NRRL B-14768AJ9654821474nuccore1590
20218Lactobacillus arizonensis partial 16S rRNA gene, strain DSM 13273AJ9654871400nuccore1590
4986Lactobacillus arizonensis 16S ribosomal RNA gene, partial sequenceAF0937571423nuccore1590
124043Lactobacillus plantarum gene for 16S rRNA, partial sequence, strain: JCM 11125.AB289250621nuccore1590

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactiplantibacillus plantarum DSM 13273GCA_001436855scaffoldncbi1590
66792Lactobacillus plantarum strain DSM 132731590.166wgspatric1590
66792Lactiplantibacillus arizonensis DSM 132732663763241draftimg1590

GC content

@refGC-contentmethod
498648Buoyant density centrifugation (BD)
6777048high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes92.708no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no86.74no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.511yes
125438spore-formingspore-formingAbility to form endo- or exosporesno79.812no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.471yes
125438motile2+flagellatedAbility to perform flagellated movementno89no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno86.2
125439BacteriaNetmotilityAbility to perform movementno77.3
125439BacteriaNetgram_stainReaction to gram-stainingpositive95.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile96.4

External links

@ref: 4986

culture collection no.: DSM 13273, ATCC BAA-171, NRRL B-14768, CCUG 45396, CIP 106786, JCM 11125, NCIMB 14068

straininfo link

  • @ref: 75971
  • straininfo: 44313

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11034490Lactobacillus arizonensis sp. nov., isolated from jojoba meal.Swezey JL, Nakamura LK, Abbott TP, Peterson REInt J Syst Evol Microbiol10.1099/00207713-50-5-18032000Acetonitriles/*metabolism, Base Composition, Carbohydrate Metabolism, *Cyclohexanes, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fermentation, Genes, rRNA, Glucosides/*metabolism, Lactobacillus/*classification/cytology/*isolation & purification/physiology, Magnoliopsida/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAMetabolism
Metabolism26163158Assessment of the in vitro antimicrobial activity of Lactobacillus species for identifying new potential antibiotics.Dubourg G, Elsawi Z, Raoult DInt J Antimicrob Agents10.1016/j.ijantimicag.2015.05.0112015Anti-Infective Agents/*analysis, Bacteriocins/*analysis, Humans, Lactobacillus acidophilus/*metabolism, Lactobacillus plantarum/*metabolism, Lactobacillus rhamnosus/*metabolism, Microbial Sensitivity TestsPathogenicity
34904273Assessing the viability of three Lactobacillus bacterial species protected in the cryoprotectants containing whey and maltodextrin during freeze-drying process.Majidzadeh Heravi R, Ghiasvand M, Rezaei E, Kargar FLett Appl Microbiol10.1111/lam.136312021Cryoprotective Agents/pharmacology, Freeze Drying/methods, *Lactobacillus, Microbial Viability, Polysaccharides, *Whey

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4986Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13273)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13273
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38642Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18954
56759Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45396)https://www.ccug.se/strain?id=45396
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
75971Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44313.1StrainInfo: A central database for resolving microbial strain identifiers
121861Curators of the CIPCollection of Institut Pasteur (CIP 106786)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106786
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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