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BacDive ID 6565
Type strain
Strain Designation 7 CCr87
Culture col. no. CCUG 30724 JCM 2011 CCM 4383 CIP 103611 DSM 10532 ATCC 33199 NCFB 2235 VPI 1294 NCIMB 13223 LMG 9435 KCTC 5048 BCRC 17266 7 CCr87 8 more
NCBI tax ID(s) 1423748 52242
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 10 (current version):
version 10 (current version)

General

@ref: 3967

BacDive-ID: 6565

DSM-Number: 10532

keywords: genome sequence, 16S sequence, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Lactobacillus gallinarum 7 CCr87 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from chicken crop.

NCBI tax id

NCBI tax idMatching level
52242species
1423748strain

strain history

@refhistory
3967<- NCFB <- J.L. Johnson, VPI 1294
67770ATCC 33199 <-- VPI 1294.
119516CIP <- 1992, F. Gasser, Inst. Pasteur, Paris, France, Lactobacillus acidophilus, group A4 <- J.L. Johnson, Blacksburg, USA: strain VPI 1294 <- W.E.C. Moore, Blacksburg, USA: strain 7 CCr87

doi: 10.13145/bacdive6565.20251217.10

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: kingdom/bacillati
  • keyword: phylum/bacillota
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus gallinarum
  • full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

@ref: 3967

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus gallinarum

full scientific name: Lactobacillus gallinarum Fujisawa et al. 1992

strain designation: 7 CCr87

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
119516positiverod-shaped
125438no91.5
125438positive93.795

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3967MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38134MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
119516CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperature
3967positivegrowth37
38134positivegrowth37
50245positivegrowth37
67770positivegrowth37
119516positivegrowth37-45
119516negativegrowth15

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
50245anaerobe
119516facultative anaerobe
125439obligate aerobe94.5

spore formation

  • @ref: 125438
  • spore formation: no
  • confidence: 92.349

murein

  • @ref: 3967
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11951617632nitrate-reduction
11951616301nitrite-reduction
11951617632nitrate+respiration
68371Potassium 5-ketogluconate-builds acid from
6837128847D-fucose-builds acid from
6837118287L-fucose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837112936D-galactose+builds acid from
6837117634D-glucose+builds acid from
6837117754glycerol-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837127613amygdalin+builds acid from

antibiotic resistance

  • @ref: 119516
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite tests

  • @ref: 119516
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
119516oxidase-
119516alcohol dehydrogenase-1.1.1.1
119516catalase-1.11.1.6
119516lysine decarboxylase-4.1.1.18
119516ornithine decarboxylase-4.1.1.17

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
3967----------++++---------+-+++++-+---+++------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
3967chicken cropUSAUSANorth America
50245Chicken crop
67770Chicken crop
119516Animal, Normal chicken cropUnited States of AmericaUSANorth AmericaBlacksburg, Virginia1964

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture
#Host#Birds#Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_206.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_146;97_157;98_175;99_206&stattab=map
  • Last taxonomy: Lactobacillus
  • 16S sequence: LC071810
  • Sequence Identity:
  • Total samples: 47444
  • soil counts: 2173
  • aquatic counts: 2250
  • animal counts: 42256
  • plant counts: 765

Interaction and safety

risk assessment

@refbiosafety levelbiosafety level comment
39671Risk group (German classification)
1195161Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionassembly levelINSDC accessionBV-BRC accessionIMG accessionNCBI tax IDscore
67770ASM143497v1 assembly for Lactobacillus gallinarum DSM 10532 = JCM 2011scaffoldGCA_0014349751423748.32663762633142374859.4
67770ASM61473v1 assembly for Lactobacillus gallinarum DSM 10532 = JCM 2011contigGCA_0006147351236533.32585427877142374833.41

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus gallinarum 16S rRNA gene, strain ATCC 3319AJ2429681533nuccore52242
20218Lactobacillus gallinarum partial 16S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC 33199AJ4177371606nuccore52242
20218Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEF412999497nuccore52242
20218L.gallinarum 16S rRNA gene, partialX97898626nuccore52242
20218L.crispatus 16S rRNA gene, partialX98052652nuccore47770
20218Lactobacillus gallinarum partial 16S rRNA gene, type strain ATCC 33199TFR6830861518nuccore52242
20218Lactobacillus gallinarum strain DSM 10532 16S ribosomal RNA gene, partial sequenceEF468093419nuccore52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: YIT 0218 (= JCM 2011)AB0082081532nuccore52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB289122667nuccore52242
20218Lactobacillus gallinarum gene for 16S rRNA, partial sequence, strain: JCM 2011AB5969471486nuccore52242
67770Lactobacillus gallinarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 2011LC0718101460nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129751538nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129761538nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129771534nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129781488nuccore47493
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129791535nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129801530nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129811525nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129821526nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129831528nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129841531nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129851529nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF4129861536nuccore1624
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412987545nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412988539nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412989539nuccore1598
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412990543nuccore47493
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412991550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412992550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412993550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412994550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412995550nuccore1580
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412996538nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412997537nuccore52242
124043Lactobacillus gallinarum strain ATCC 33199 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.EF412998541nuccore1624
124043Lactobacillus gallinarum strain JCM 2011 16S ribosomal RNA gene, partial sequence.MN587971980nuccore52242

GC content

@refGC-contentmethod
396735.9thermal denaturation, midpoint method (Tm)
6777036.5genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe94.5
125439BacteriaNetgram_stainReaction to gram-stainingpositive75.9
125439BacteriaNetmotilityAbility to perform movementno51.1
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes62.5
125438gram-positivegram-positivePositive reaction to Gram-stainingyes93.795no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no65.52no
125438spore-formingspore-formingAbility to form endo- or exosporesno92.349no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.551yes
125438motile2+flagellatedAbility to perform flagellated movementno91.5no

Literature

@ref: 3967

culture collection no.: CCUG 30724, JCM 2011, CCM 4383, CIP 103611, DSM 10532, ATCC 33199, NCFB 2235, VPI 1294, BCRC 17266, KCTC 5048, LMG 9435, NCIMB 13223

straininfo link

  • @ref: 126262
  • straininfo: 3188

literature

titleauthorsjournalDOIyearmeshtopicPubmed-IDtopic2
Changes in broiler performance, duodenal histomorphometry, and caeca microbiota composition in response to wheat-barley based diets supplemented with non-antibiotic additivesPineda-Quiroga C, Camarinha-Silva A, Atxaerandio R, Ruiz R, Garcia-Rodriguez A.Anim Feed Sci Technol10.1016/j.anifeedsci.2017.09.0022017
Dietary Manipulation on Gut Microbiome in Patients with Diabetes and Colorectal cancerChu N.Curr Nutr Rep2025Diabetes, Colorectal Cancer, Red Meat, Fermentable Carbohydrates, Fermentable Protein, Specific Intestinal Microbiome
Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981).Fujisawa T, Benno Y, Yaeshima T, Mitsuoka TInt J Syst Bacteriol10.1099/00207713-42-3-4871992DNA, Bacterial/chemistry, Lactobacillus/*classification/genetics/physiology, Lactobacillus acidophilus/*classification, Nucleic Acid Hybridization, Phenotype, Sequence Homology, Nucleic AcidPhylogeny1503977Phenotype
Evaluation of random amplified polymorphic DNA (RAPD)-PCR as a method to differentiate Lactobacillus acidophilus, Lactobacillus crispatus, Lactobacillus amylovorus, Lactobacillus gallinarum, Lactobacillus gasseri, and Lactobacillus johnsonii.Du Plessis EM, Dicks LM.Curr Microbiol10.1007/bf002942861995classification, methodsPhylogeny7606186
Identification of and hydrogen peroxide production by fecal and vaginal lactobacilli isolated from Japanese women and newborn infants.Song YL, Kato N, Matsumiya Y, Liu CX, Kato H, Watanabe K.J Clin Microbiol10.1128/jcm.37.9.3062-3064.19991999microbiology, microbiology, isolation & purification, metabolismMetabolism10449509Enzymology
Lactobacillus fornicalis sp. nov., isolated from the posterior fornix of the human vagina.Dicks LM, Silvester M, Lawson PA, Collins MD.Int J Syst Evol Microbiol10.1099/00207713-50-3-12532000microbiology, classification, PhylogenyPhylogeny10843070
Use of the DNA sequence of variable regions of the 16S rRNA gene for rapid and accurate identification of bacteria in the Lactobacillus acidophilus complex.Kullen MJ, Sanozky-Dawes RB, Crowell DC, Klaenhammer TR.J Appl Microbiol10.1046/j.1365-2672.2000.01146.x2000genetics, genetics, analysis11021584
Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis.Ogier JC, Son O, Gruss A, Tailliez P, Delacroix-Buchet A.Appl Environ Microbiol10.1128/aem.68.8.3691-3701.20022002classification, genetics, Bacterial Typing Techniques, Ecosystem, microbiologyPhylogeny12147461
Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis.Guan LL, Hagen KE, Tannock GW, Korver DR, Fasenko GM, Allison GE.Appl Environ Microbiol10.1128/aem.69.11.6750-6757.20032003microbiology, microbiology, classification, methods, methodsPhylogeny14602636
Lactobacillus kitasatonis sp. nov., from chicken intestine.Mukai T, Arihara K, Ikeda A, Nomura K, Suzuki F, Ohori H.Int J Syst Evol Microbiol10.1099/ijs.0.02815-02003microbiology, microbiology, classification, PhylogenyPhylogeny14657145
Characterisation of the microbiota of rice sourdoughs and description of Lactobacillus spicheri sp. nov.Meroth CB, Hammes WP, Hertel C.Syst Appl Microbiol10.1078/0723202043228817632004classification, Food Microbiology, microbiologyPhylogeny15046303Biotechnology
Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R.Appl Environ Microbiol10.1128/aem.70.5.3110-3121.20042004classification, genetics, genetics, genetics, OperonPhylogeny15128574
Quantitative analysis of diverse Lactobacillus species present in advanced dental caries.Byun R, Nadkarni MA, Chhour KL, Martin FE, Jacques NA, Hunter N.J Clin Microbiol10.1128/jcm.42.7.3128-3136.20042004isolation & purification, microbiologyEnzymology15243071Phylogeny
Lactobacillus suntoryeus sp. nov., isolated from malt whisky distilleries.Cachat E, Priest FG.Int J Syst Evol Microbiol10.1099/ijs.0.63266-02005classification, isolation & purification, microbiology, microbiologyPhylogeny15653849Enzymology
Microbes on the human vaginal epithelium.Hyman RW, Fukushima M, Diamond L, Kumm J, Giudice LC, Davis RW.Proc Natl Acad Sci U S A10.1073/pnas.05032361022005microbiology, genetics15911771
Bifidobacterium-selective isolation and enumeration from chicken caeca by a modified oligosaccharide antibiotic-selective agar medium.Thitaram SN, Siragusa GR, Hinton A.Lett Appl Microbiol10.1111/j.1472-765x.2005.01765.x2005microbiology, microbiology, growth & development, isolation & purification, Culture MediaCultivation16162144Enzymology
Detection, characterization, and in vitro and in vivo expression of genes encoding S-proteins in Lactobacillus gallinarum strains isolated from chicken crops.Hagen KE, Guan LL, Tannock GW, Korver DR, Allison GE.Appl Environ Microbiol10.1128/aem.71.11.6633-6643.20052005microbiology, microbiology, classification, isolation & purification, metabolism, metabolismMetabolism16269691Phylogeny
Lactobacillus suntoryeus Cachat and Priest 2005 is a later synonym of Lactobacillus helveticus (Orla-Jensen 1919) Bergey et al. 1925 (Approved Lists 1980).Naser SM, Hagen KE, Vancanneyt M, Cleenwerck I, Swings J, Tompkins TA.Int J Syst Evol Microbiol10.1099/ijs.0.64001-02006classification, microbiology, classificationPhylogeny16449439
Cloacal Lactobacillus isolates from broilers show high prevalence of resistance towards macrolide and lincosamide antibiotics.Cauwerts K, Pasmans F, Devriese LA, Martel A, Haesebrouck F, Decostere A.Avian Pathol10.1080/030794506005981372006microbiology, microbiology, drug effects, pharmacology, pharmacology, Drug Resistance, Multiple, BacterialPathogenicity16595310
DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients.Spiess B, Seifarth W, Hummel M, Frank O, Fabarius A, Zheng C, Morz H, Hehlmann R, Buchheidt D.J Clin Microbiol10.1128/jcm.00942-072007isolation & purification, microbiology, methodsEnzymology17715373Phylogeny
Estimation of 16S rRNA gene copy number in several probiotic Lactobacillus strains isolated from the gastrointestinal tract of chicken.Lee CM, Sieo CC, Abdullah N, Ho YW.FEMS Microbiol Lett10.1111/j.1574-6968.2008.01305.x2008microbiology, microbiology, genetics, genetics, Gene Dosage, Probiotics18707622
Diversity of lactic acid bacteria in two Flemish artisan raw milk Gouda-type cheeses.Van Hoorde K, Verstraete T, Vandamme P, Huys G, Huys G.Food Microbiol10.1016/j.fm.2008.06.0062008classification, Food Microbiology, Phylogeny, microbiologyPhylogeny18721684Biotechnology
Comparison and utilization of repetitive-element PCR techniques for typing Lactobacillus isolates from the chicken gastrointestinal tract.Stephenson DP, Moore RJ, Allison GE.Appl Environ Microbiol10.1128/aem.01150-092009microbiology, methods, methods, methods, Interspersed Repetitive Sequences, classification, isolation & purificationPhylogeny19749057Enzymology
Characterization of a novel Lactobacillus species closely related to Lactobacillus johnsonii using a combination of molecular and comparative genomics methods.Sarmiento-Rubiano LA, Berger B, Moine D, Zuniga M, Perez-Martinez G, Yebra MJ.BMC Genomics10.1186/1471-2164-11-5042010genetics, methods, Phylogeny, genetics, methodsPhylogeny20849602
Biodiversity of lactic acid bacteria and yeasts in spontaneously-fermented buckwheat and teff sourdoughs.Moroni AV, Arendt EK, Dal Bello F.Food Microbiol10.1016/j.fm.2010.10.0162011growth & development, growth & development, microbiology, microbiology, microbiology21356457
Influence of antimicrobial feed additives on broiler commensal posthatch gut microbiota development and performance.Torok VA, Allison GE, Percy NJ, Ophel-Keller K, Hughes RJ.Appl Environ Microbiol10.1128/aem.02300-102011microbiology, microbiology, drug effects, administration & dosage, Diet, BiodiversityPathogenicity21441326
Resource partitioning in relation to cohabitation of Lactobacillus species in the mouse forestomach.Tannock GW, Wilson CM, Loach D, Cook GM, Eason J, O'Toole PW, Holtrop G, Lawley B.ISME J10.1038/ismej.2011.1612012microbiology, growth & development, metabolism, metabolism, growth & developmentMetabolism22094343
Lactic acid bacterium and yeast microbiotas of 19 sourdoughs used for traditional/typical italian breads: interactions between ingredients and microbial species diversity.Minervini F, Di Cagno R, Lattanzi A, De Angelis M, Antonielli L, Cardinali G, Cappelle S, Gobbetti M.Appl Environ Microbiol10.1128/aem.07721-112012physiology, Food Analysis, Food Microbiology, Biodiversity, Microbial Interactions, physiologyBiotechnology22156414
Functional properties of Lactobacillus strains isolated from dairy products.Bujnakova D, Kmet V.Folia Microbiol (Praha)10.1007/s12223-012-0121-x2012microbiology, isolation & purification, physiology, microbiologyEnzymology22488103Phylogeny
Production of organic acids by probiotic lactobacilli can be used to reduce pathogen load in poultry.Neal-McKinney JM, Lu X, Duong T, Larson CL, Call DR, Shah DH, Konkel ME.PLoS One10.1371/journal.pone.00439282012microbiology, metabolism, prevention & control, veterinary, prevention & control, administration & dosageMetabolism22962594
Lactic acid fermentation as a tool to enhance the functional features of Echinacea spp.Rizzello CG, Coda R, Macias DS, Pinto D, Marzani B, Filannino P, Giuliani G, Paradiso VM, Di Cagno R, Gobbetti M.Microb Cell Fact10.1186/1475-2859-12-442013metabolism, metabolismMetabolism23642310
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Characterization and in vitro properties of oral lactobacilli in breastfed infants.Vestman NR, Timby N, Holgerson PL, Kressirer CA, Claesson R, Domellof M, Ohman C, Tanner AC, Hernell O, Johansson I.BMC Microbiol10.1186/1471-2180-13-1932013microbiology, isolation & purification, Breast Feeding, administration & dosageEnzymology23945215Phylogeny
Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM.Johnson B, Selle K, O'Flaherty S, Goh YJ, Klaenhammer T.Microbiology (Reading)10.1099/mic.0.070755-02013chemistry, analysis24002751
Comparative Analysis of two Component Signal Transduction Systems of the Lactobacillus Acidophilus Group.Cui Y, Qu X.Braz J Microbiol10.1590/s1517-838220110001000192011Bioinformatics analysis, Histidine Protein Kinase, Two Component System, Lactobacillus Acidophilus Group, Response Regulator Protein24031616
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Peptidoglycan hydrolases as species-specific markers to differentiate Lactobacillus helveticus from Lactobacillus gallinarum and other closely related homofermentative lactobacilli.Jebava I, Chuat V, Lortal S, Valence F.Curr Microbiol10.1007/s00284-013-0512-52014enzymology, genetics, geneticsEnzymology24362553
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Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM.Hymes JP, Johnson BR, Barrangou R, Klaenhammer TR.Appl Environ Microbiol10.1128/aem.00024-162016metabolism, metabolism, metabolism, metabolismMetabolism26921419
Presence of pathogenic Escherichia coli is correlated with bacterial community diversity and composition on pre-harvest cattle hides.Chopyk J, Moore RM, DiSpirito Z, Stromberg ZR, Lewis GL, Renter DG, Cernicchiaro N, Moxley RA, Wommack KE.Microbiome10.1186/s40168-016-0155-42016Cattle, 16S rRNA gene, EHEC, Microbiome, Stec, Non-o157, O157, Community Profiles, genetics, veterinary, genetics, Food Microbiology, genetics, geneticsBiotechnology27000779Phylogeny
Metagenomic Analysis of Antibiotic-Induced Changes in Gut Microbiota in a Pregnant Rat Model.Khan I, Azhar EI, Abbas AT, Kumosani T, Barbour EK, Raoult D, Yasir M.Front Pharmacol10.3389/fphar.2016.001042016Rats, Pregnancy, 16S rRNA gene, azithromycin, Gut Microbiota, amoxicillin, CefaclorPhylogeny27199748
Therapeutic Potential of Gramicidin S in the Treatment of Root Canal Infections.Berditsch M, Lux H, Babii O, Afonin S, Ulrich AS.Pharmaceuticals (Basel)10.3390/ph90300562016polymyxin B, Enterococcus faecalis, biofilms, Gramicidin S, Tetracycline Resistance, Alarmone Ppgpp, Root Canal Infections27618065
Studies on the removal of Cd ions by gastrointestinal lactobacilli.Polak-Berecka M, Boguta P, Ciesla J, Bieganowski A, Skrzypek T, Czernecki T, Wasko A.Appl Microbiol Biotechnol10.1007/s00253-016-8048-92017Cadmium, Metal ions, bioaccumulation, Lactobacillus sp., biosorption, microbiology, drug effects, metabolism, metabolism, metabolismMetabolism28004153Pathogenicity
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The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM.Johnson BR, O'Flaherty S, Goh YJ, Carroll I, Barrangou R, Klaenhammer TR.Front Microbiol10.3389/fmicb.2017.011852017Mucin, Fibronectin, Serine protease, Probiotic, s-layer, lactobacillus, Intestinal Barrier Integrity, S-layer Associated Proteins28713337
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Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut.Beltran D, Romo-Vaquero M, Espin JC, Tomas-Barberan FA, Selma MV.Int J Syst Evol Microbiol10.1099/ijsem.0.0027352018Ellagic acid, Ellagitannin, Gut Microbiota, Urolithin, Isourolithin A, Polyphenol Metabolism, microbiology, classification, PhylogenyPhylogeny29583112Metabolism
Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers.Dai Z, Coker OO, Nakatsu G, Wu WKK, Zhao L, Chen Z, Chan FKL, Kristiansen K, Sung JJY, Wong SH, Yu J.Microbiome10.1186/s40168-018-0451-22018Ecology, Microbiota, Colorectal Cancer, Diagnostic Marker, classification, genetics, etiology, Metagenome, Metagenomics, Gastrointestinal MicrobiomePhylogeny29642940Genetics
A Comprehensive Genome Survey Provides Novel Insights into Bile Salt Hydrolase (BSH) in Lactobacillaceae.Liang L, Yi Y, Lv Y, Qian J, Lei X, Zhang G.Molecules10.3390/molecules230511572018Lactobacillaceae, Genome Survey, Bile Salt Hydrolase (Bsh), Bsh Classification, Cholesterol-lowering Probiotics, enzymology, genetics, genetics, metabolism, Genomics, Genome, BacterialGenetics29751655Enzymology
Orally administered heat-killed Lactobacillus paracasei MCC1849 enhances antigen-specific IgA secretion and induces follicular helper T cells in mice.Arai S, Iwabuchi N, Takahashi S, Xiao JZ, Abe F, Hachimura S.PLoS One10.1371/journal.pone.01990182018immunology, metabolism, immunologyMetabolism29897995
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Complex ecological interactions of Staphylococcus aureus in tampons during menstruation.Jacquemond I, Muggeo A, Lamblin G, Tristan A, Gillet Y, Bolze PA, Bes M, Gustave CA, Rasigade JP, Golfier F, Ferry T, Dubost A, Abrouk D, Barreto S, Prigent-Combaret C, Thioulouse J, Lina G, Muller D.Sci Rep10.1038/s41598-018-28116-32018microbiology, isolation & purification, microbiology, microbiology, Menstruation, MicrobiotaEnzymology29967393Phylogeny
Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli.Crawley AB, Henriksen ED, Stout E, Brandt K, Barrangou R.Sci Rep10.1038/s41598-018-29746-32018enzymology, genetics, Recombination, Genetic, CRISPR-Cas SystemsEnzymology30068963
Targeted gene inactivation in Lactobacillus gallinarum ATCC 33199 using chromosomal integration.Askelson TE, McMullin AB, Duong TPoult Sci10.3382/ps/pey3632019Chromosomes, Bacterial, Gene Knockout Techniques, *Gene Silencing, Lactobacillus/*genetics, Lactose/metabolism, Mutagenesis, Insertional, beta-Galactosidase/geneticsMetabolism30124967
Epitopes identified in GAPDH from Clostridium difficile recognized as common antigens with potential autoimmunizing properties.Razim A, Pacyga K, Aptekorz M, Martirosian G, Szuba A, Pawlak-Adamska E, Brzychczy-Wloch M, Myc A, Gamian A, Gorska S.Sci Rep10.1038/s41598-018-32193-92018immunology, immunology, immunology, immunology, immunology, immunology30224677
Microbiota dysbiosis is associated with HPV-induced cervical carcinogenesis.Kwasniewski W, Wolun-Cholewa M, Kotarski J, Warchol W, Kuzma D, Kwasniewska A, Gozdzicka-Jozefiak A.Oncol Lett10.3892/ol.2018.95092018Cervical cancer, Cervical Microbiota, 16S Ribosomal Dna Polymerase Chain Reaction-amplification And Next Generation SequencingPhylogeny30546437
Effects of protease and phytase supplements on small intestinal microbiota and amino acid digestibility in broiler chickens.Borda-Molina D, Zuber T, Siegert W, Camarinha-Silva A, Feuerstein D, Rodehutscord M.Poult Sci10.3382/ps/pez0382019Enzymes, Amino acids, Digestibility, Microbiota, Broiler chickens, metabolism, pharmacology, pharmacology, analysis, drug effectsEnzymology30768134Metabolism
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Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data.Seol D, Jhang SY, Kim H, Kim SY, Kwak HS, Kim SH, Lee W, Park S, Kim H, Cho S, Kwak W.Front Microbiol10.3389/fmicb.2019.016832019Identification, Lactic acid bacteria, Probiotics, Metagenomics, Ngs, Whole Genome Shotgun Sequencing, Mapping CoverageGenetics31440213
Development of Bacterial Therapeutics against the Bovine Respiratory Pathogen Mannheimia haemolytica.Amat S, Timsit E, Baines D, Yanke J, Alexander TW.Appl Environ Microbiol10.1128/aem.01359-192019Mannheimia Haemolytica, Bovine Respiratory Disease, Feedlot Cattle, Bacterial Therapeutics, Nasopharyngeal Commensal Bacteria, pathogenicity, microbiology, therapy, therapy, microbiology, therapy31444198
Contrasting diversity of vaginal lactobacilli among the females of Northeast India.Das Purkayastha S, Bhattacharya MK, Prasad HK, Upadhyaya H, Lala SD, Pal K, Das M, Sharma GD, Bhattacharjee MJ.BMC Microbiol10.1186/s12866-019-1568-62019lactobacillus, Northeast India, Vaginal Microbiota, Non-pregnant And Pregnant Women, microbiology, isolation & purification, BiodiversityEnzymology31455211Phylogeny
A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex.Wittouck S, Wuyts S, Meehan CJ, van Noort V, Lebeer S.mSystems10.1128/msystems.00264-192019Taxonomy, Genomics, lactobacillus, species delimitation, Core GenomeGenetics31481601
Diversity of endocervical microbiota associated with genital Chlamydia trachomatis infection and infertility among women visiting obstetrics and gynecology clinics in Malaysia.Cheong HC, Yap PSX, Chong CW, Cheok YY, Lee CYQ, Tan GMY, Sulaiman S, Hassan J, Sabet NS, Looi CY, Gupta R, Arulanandam B, AbuBakar S, Teh CSJ, Chang LY, Wong WF.PLoS One10.1371/journal.pone.02246582019microbiology, isolation & purification, microbiology, microbiology, immunologyEnzymology31738795Phylogeny
Effect of a Multi-Species Probiotic on the Colonisation of Salmonella in Broilers.Neveling DP, van Emmenes L, Ahire JJ, Pieterse E, Smith C, Dicks LMT.Probiotics Antimicrob Proteins10.1007/s12602-019-09593-y2020Poultry, Immunity, Probiotics, Salmonella, Lysozyme Blood Levels, prevention & control, prevention & control, therapeutic use31784950
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Assembly of hundreds of novel bacterial genomes from the chicken caecum.Glendinning L, Stewart RD, Pallen MJ, Watson KA, Watson M.Genome Biol10.1186/s13059-020-1947-12020Chicken, Microbiota, Microbial ecology, metagenome, Mag, Caeca, microbiology, Genome, Bacterial, Metagenome, Gastrointestinal MicrobiomeGenetics32051016
First evidence of production of the lantibiotic nisin P.Garcia-Gutierrez E, O'Connor PM, Saalbach G, Walsh CJ, Hegarty JW, Guinane CM, Mayer MJ, Narbad A, Cotter PD.Sci Rep10.1038/s41598-020-60623-02020metabolism, biosynthesis, biosynthesisMetabolism32111904
Genome-based species-specific primers for rapid identification of six species of Lactobacillus acidophilus group using multiplex PCR.You I, Kim EB.PLoS One10.1371/journal.pone.02305502020genetics, genetics32196527
Design of PCR assays to specifically detect and identify 37 Lactobacillus species in a single 96 well plate.Kim E, Yang SM, Lim B, Park SH, Rackerby B, Kim HY.BMC Microbiol10.1186/s12866-020-01781-z2020PCR, Comparative genomics, 16S rRNA gene, species-specific primer, lactobacillus, Probiotic Product, classification, genetics, genetics, methodsPhylogeny32295530Genetics
An Overview of the Elusive Passenger in the Gastrointestinal Tract of Cattle: The Shiga Toxin Producing Escherichia coli.Sapountzis P, Segura A, Desvaux M, Forano E.Microorganisms10.3390/microorganisms80608772020Cattle, Microbiota, Bacterial Interactions, Stec Colonization32531983
Probiotics: an Antibiotic Replacement Strategy for Healthy Broilers and Productive Rearing.Neveling DP, Dicks LMT.Probiotics Antimicrob Proteins10.1007/s12602-020-09640-z2021Poultry, Probiotics, Productive Rearing, microbiology, Bacteria, microbiology, therapeutic use, drug effectsPathogenicity32556932
Chemical, Microbiological, and Functional Characterization of Kefir Produced from Cow's Milk and Soy Milk.Gamba RR, Yamamoto S, Abdel-Hamid M, Sasaki T, Michihata T, Koyanagi T, Enomoto T.Int J Microbiol10.1155/2020/7019286202032565815
Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA.EFSA Panel on Biological Hazards (BIOHAZ), Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Girones R, Herman L, Koutsoumanis K, Lindqvist R, Norrung B, Robertson L, Ru G, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Threlfall J, Wahlstrom H, Cocconcelli PS, Klein G, Prieto Maradona M, Querol A, Peixe L, Suarez JE, Sundh I, Vlak JM, Aguilera-Gomez M, Barizzone F, Brozzi R, Correia S, Heng L, Istace F, Lythgo C, Fernandez Escamez PS.EFSA J10.2903/j.efsa.2017.46642017Fungi, Bacteria, Safety, Virus, Yeast, Qps, Food And Feed32625421
Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 7: suitability of taxonomic units notified to EFSA until September 2017.EFSA Panel on Biological Hazards (BIOHAZ), Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Girones R, Koutsoumanis K, Lindqvist R, Norrung B, Robertson L, Ru G, Fernandez Escamez PS, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Threlfall J, Wahlstrom H, Cocconcelli PS, Peixe L, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.EFSA J10.2903/j.efsa.2018.51312018Bacteria, Safety, Yeast, Qps, Kitasatospora paracochleata, Komagataella phaffii32625678
Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 8: suitability of taxonomic units notified to EFSA until March 2018.EFSA Panel on Biological Hazards (BIOHAZ), Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Fernandez Escamez PS, Girones R, Koutsoumanis K, Lindqvist R, Norrung B, Robertson L, Ru G, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Threlfall J, Wahlstrom H, Cocconcelli PS, Peixe L, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.EFSA J10.2903/j.efsa.2018.53152018Bacteria, Safety, Yeast, Yarrowia lipolytica, Qps, Paracoccus Carotinifaciens, Paenibacillus Lentus32625958
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Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 10: Suitability of taxonomic units notified to EFSA until March 2019.EFSA Panel on Biological Hazards (BIOHAZ), Koutsoumanis K, Allende A, Alvarez-Ordonez A, Bolton D, Bover-Cid S, Chemaly M, Davies R, De Cesare A, Hilbert F, Lindqvist R, Nauta M, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Cocconcelli PS, Fernandez Escamez PS, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Barizzone F, Correia S, Herman L.EFSA J10.2903/j.efsa.2019.57532019Bacteria, Safety, Yeast, Phaeodactylum tricornutum, Euglena gracilis, Qps, Gluconobacter Frateurii, Sphingomonas Elodea, Corynebacterium Ammoniagenes, Burkholderia Ubonensis, Microbacterium Foliorum, Corynebacterium Casei32626372
Antioxidant, Antimicrobial, and Other Biological Properties of Pompia Juice.Barberis A, Deiana M, Spissu Y, Azara E, Fadda A, Serra PA, D'hallewin G, Pisano M, Serreli G, Orru G, Scano A, Steri D, Sanjust E.Molecules10.3390/molecules251431862020Phenolics, Antioxidant activity, Colon Cancer Cells, Chemical Characterization, Pompia Juice, Antimicrobial-antibiofilm Activity, drug effects, chemistry, pharmacology, pharmacology, pharmacology, pharmacologyPathogenicity32668641
S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM.Klotz C, Goh YJ, O'Flaherty S, Barrangou R.BMC Microbiol10.1186/s12866-020-01908-22020Cell surface, Probiotics, s-layer, lactobacillus, cytology, physiology, genetics, chemistry32787778
Occurrence of bacteria with technological and probiotic potential in Argentinian human breast-milk.Oddi S, Binetti A, Burns P, Cuatrin A, Reinheimer J, Salminen S, Vinderola G.Benef Microbes10.3920/bm2020.00542020Viability, IL-10, Freeze-drying, lactobacilli, Human-breast Milk, microbiology, isolation & purification, ProbioticsEnzymology33161735Phylogeny
Plasmids encode niche-specific traits in Lactobacillaceae.Davray D, Deo D, Kulkarni R.Microb Genom10.1099/mgen.0.0004722021Lactobacillaceae, Comparative genomics, Ecological niche, Clusters Of Orthologous Groups, Stress Resistance Genes, Plasmid-encoded Trait, genetics, geneticsGenetics33166245
Development of an Antigen Delivery Platform Using Lactobacillus acidophilus Decorated With Heterologous Proteins: A Sheep in Wolf's Clothing Story.Uriza PJ, Trautman C, Palomino MM, Fina Martin J, Ruzal SM, Roset MS, Briones G.Front Microbiol10.3389/fmicb.2020.5093802020lactobacillus, Oral Vaccination, Antigen Delivery System, Shiga Toxigenic Escherichia Coli, S-layer (Fusion) Proteins33193117
Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa.Lone A, Mottawea W, Ait Chait Y, Hammami R.Microorganisms10.3390/microorganisms90101662021Poultry, Clostridium perfringens, Antimicrobial activity, Salmonella, lactobacilli, Bacteriocins, Probiotic Candidates33451155
Probiotics protect against RSV infection by modulating the microbiota-alveolar-macrophage axis.Ji JJ, Sun QM, Nie DY, Wang Q, Zhang H, Qin FF, Wang QS, Lu SF, Pang GM, Lu ZG.Acta Pharmacol Sin10.1038/s41401-020-00573-52021Probiotics, Alveolar macrophages, Respiratory syncytial virus, Gut Microbiota, Scfas, Lung Microbiota, metabolism, prevention & control, therapeutic use, therapeutic use, physiologyMetabolism33495515
A muramidase from Acremonium alcalophilum hydrolyse peptidoglycan found in the gastrointestinal tract of broiler chickens.Frederiksen CO, Cohn MT, Skov LK, Schmidt EGW, Schnorr KM, Buskov S, Leppanen M, Maasilta I, Perez-Calvo E, Lopez-Ulibarri R, Klausen M.J Ind Microbiol Biotechnol10.1093/jimb/kuab0082021Feed additive, Chickens, Muramidase, metabolism, metabolism, metabolism, metabolism, metabolismMetabolism33693885
Preventive antimicrobial action and tissue architecture ameliorations of Bacillus subtilis in challenged broilers.Soliman ES, Hamad RT, Abdallah MS.Vet World10.14202/vetworld.2021.523-5362021Immunity, Probiotics, Broiler chickens, Histopathological Photomicrographs, In Vitro Antimicrobial, In Vivo Preventive33776320
Gut Microbial Composition and Predicted Functions Are Not Associated with Feather Pecking and Antagonistic Behavior in Laying Hens.Borda-Molina D, Iffland H, Schmid M, Muller R, Schad S, Seifert J, Tetens J, Bessei W, Bennewitz J, Camarinha-Silva A.Life (Basel)10.3390/life110302352021Laying hen, Agonistic behavior, Gut Microbiota, Feather Pecking, Microbiability33809351
Relative phytase efficacy values as affected by response traits, including ileal microbiota composition.Kunzel S, Borda-Molina D, Zuber T, Hartung J, Siegert W, Feuerstein D, Camarinha-Silva A, Rodehutscord M.Poult Sci10.1016/j.psj.2021.1011332021Digestibility, Method, Evaluation, Bone, Microbiota, 6-Phytase, Microbiota33940282
Evaluation of Dietary Supplements Containing Viable Bacteria by Cultivation/MALDI-TOF Mass Spectrometry and PCR Identification.Mohar Lorbeg P, Golob M, Kramer M, Treven P, Bogovic Matijasic B.Front Microbiol10.3389/fmicb.2021.7001382021PCR, Identification, Viability, Bifidobacteria, Probiotic, MALDI-TOF MS, lactobacilli, Dietary Supplements34349743
Assessing the Impact of Flavophospholipol and Virginiamycin Supplementation on the Broiler Microbiota: a Prospective Controlled Intervention Study.Mysara M, Berkell M, Xavier BB, De Backer S, Lammens C, Hautekiet V, Petkov S, Goossens H, Kumar-Singh S, Malhotra-Kumar S.mSystems10.1128/msystems.00381-212021Microbiota, flavomycin, Broiler Chicken, 16s Rrna Sequencing, Virginiamycin, FlavophospholipolPhylogeny34463581
Microbiological Quality and Resistance to an Artificial Gut Environment of Two Probiotic Formulations.Mazzantini D, Celandroni F, Calvigioni M, Panattoni A, Labella R, Ghelardi E.Foods10.3390/foods101127812021Quality, Identification, Probiotics, Viable Cells, Gastrointestinal Behavior34829062
Lactobacillus gallinarum modulates the gut microbiota and produces anti-cancer metabolites to protect against colorectal tumourigenesis.Sugimura N, Li Q, Chu ESH, Lau HCH, Fong W, Liu W, Liang C, Nakatsu G, Su ACY, Coker OO, Wu WKK, Chan FKL, Yu J.Gut10.1136/gutjnl-2020-3239512021Probiotics, Colorectal Cancer34937766
Probiotics and Postbiotics as Substitutes of Antibiotics in Farm Animals: A Review.Zamojska D, Nowak A, Nowak I, Macierzynska-Piotrowska E.Animals (Basel)10.3390/ani111234312021Broiler, Pig, Antibiotic, Lactic acid bacteria, Bovine, Piglet, Probiotic, Farm animal, Postbiotic34944208
Protective Effects of Novel Lactobacillaceae Strains Isolated from Chicken Caeca against Necrotic Enteritis Infection: In Vitro and In Vivo Evidences.Vieco-Saiz N, Belguesmia Y, Raspoet R, Auclair E, Padgett C, Bailey C, Gancel F, Drider D.Microorganisms10.3390/microorganisms100101522022Cytotoxicity, Clostridium perfringens, In vivo, Biofilm, Probiotics, Chicken Gastrointestinal Tract, Limosilactobacillus Reuteri, Ligilactobacillus Salivarius, Necrotic Enteritis (Ne)35056601
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Targeting Gut Microbiota With Natural Polysaccharides: Effective Interventions Against High-Fat Diet-Induced Metabolic Diseases.Sun CY, Zheng ZL, Chen CW, Lu BW, Liu D.Front Microbiol10.3389/fmicb.2022.8592062022Polysaccharides, Obesity, Metabolic diseases, High-fat diet, Gut Microbiota35369480
Determination of Antiviral Mechanism of Centenarian Gut-Derived Limosilactobacillus fermentum Against Norovirus.Li Y, Gao J, Xue L, Shang Y, Cai W, Xie X, Jiang T, Chen H, Zhang J, Wang J, Chen M, Ding Y, Wu Q.Front Nutr10.3389/fnut.2022.8126232022Antiviral Activity, norovirus, Comparative Genomic Analysis, Limosilactobacillus Fermentum35419394
Putrescine Production by Latilactobacillus curvatus KP 3-4 Isolated from Fermented Foods.Hirano R, Kume A, Nishiyama C, Honda R, Shirasawa H, Ling Y, Sugiyama Y, Nara M, Shimokawa H, Kawada H, Koyanagi T, Ashida H, Okuda S, Matsumoto M, Takagi H, Kurihara S.Microorganisms10.3390/microorganisms100406972022Polyamine, Lactic acid bacteria, Probiotics, Whole-genome SequencingGenetics35456748
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Evaluation and comparison of antibiotic susceptibility profiles of Streptomyces spp. from clinical specimens revealed common and region-dependent resistance patterns.Kotrbova L, Lara AC, Corretto E, Scharfen J, Ulmann V, Petrickova K, Chronakova A.Sci Rep10.1038/s41598-022-13094-42022Streptomyces35672429
Biosynthetic potential of the global ocean microbiome.Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlstrom CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, Larralde M, Carroll LM, Sanchez P, Zayed AA, Cronin DR, Acinas SG, Bork P, Bowler C, Delmont TO, Gasol JM, Gossert AD, Kahles A, Sullivan MB, Wincker P, Zeller G, Robinson SL, Piel J, Sunagawa S.Nature10.1038/s41586-022-04862-32022Oceans and Seas, Biosynthetic Pathways, Microbiota35732736
Effects of microbiota on anticancer drugs: Current knowledge and potential applications.Huang J, Liu W, Kang W, He Y, Yang R, Mou X, Zhao W.EBioMedicine10.1016/j.ebiom.2022.1041972022Probiotics, Microbiota, Anticancer drug, Fecal Microbiota Transplantation, Immune Checkpoint Inhibitor, Antineoplastic Agents, Probiotics, Microbiota35933808
Dietary oxidized beef protein alters gut microbiota and induces colonic inflammatory damage in C57BL/6 mice.Yin Y, Cai J, Zhou L, Xing L, Zhang W.Front Nutr10.3389/fnut.2022.9802042022Protein oxidation, Beef, Intestinal barrier, Colon Inflammation, Gut Microbiota (Gm)Pathogenicity36118776
MADET: a Manually Curated Knowledge Base for Microbiomic Effects on Efficacy and Toxicity of Anticancer Treatments.Zhang J, Chen X, Zou J, Li C, Kang W, Guo Y, Liu S, Zhao W, Mou X, Huang J, Ke J.Microbiol Spectr10.1128/spectrum.02116-222022Toxicity, Database, Microbiota, efficacy, Anticancer Treatment, Lung Neoplasms, Antineoplastic Agents36255293
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Quxie Capsule Alleviates Colitis-associated Colorectal Cancer Through Modulating the Gut Microbiota and Suppressing A. fumigatus-induced Aerobic Glycolysis.Zhang Z, Chen Y, Zheng Y, Wang L, Shen S, Yang G, Yang Y, Wang T.Integr Cancer Ther10.1177/153473542211385342022Aspergillus fumigatus, Probiotics, glycolysis, Colitis-associated Colon Cancer, Quxie Capsule, Colonic Neoplasms, Colitis, Gastrointestinal Microbiome, Colitis-Associated Neoplasms36412281
Lacticaseibacillus rhamnosus CA15 (DSM 33960) as a Candidate Probiotic Strain for Human Health.Pino A, Vaccalluzzo A, Caggia C, Balzaretti S, Vanella L, Sorrenti V, Ronkainen A, Satokari R, Randazzo CL.Nutrients10.3390/nu142249022022Safety, Antioxidant activity, Anti-inflammatory activity, lactobacilli, Pathogen Inhibition, Functional Features, Probiotics, Lacticaseibacillus rhamnosus36432588
Succession, Replacement, and Modification of Chicken Litter Microbiota.Kubasova T, Faldynova M, Crhanova M, Karasova D, Zeman M, Babak V, Rychlik I.Appl Environ Microbiol10.1128/aem.01809-222022Litter, Chicken, Microbiota, Antibiotic Resistance, Cecum, Bedding, Chickens, Microbiota36468876
Changes in the Cervical Microbiota of Women with Different High-Risk Human Papillomavirus Loads.Camargo M, Vega L, Munoz M, Sanchez R, Patarroyo ME, Ramirez JD, Patarroyo MA.Viruses10.3390/v141226742022Human papillomavirus, Follow-up, Viral load, Next Generation Sequencing, Cervical Microbiota, Papillomavirus Infections, Uterine Cervical Neoplasms, Microbiota36560678
Dietary supplementation of solubles from shredded, steam-exploded pine particles modifies gut length and cecum microbiota in cyclic heat-stressed broilers.Goel A, Ncho CM, Jeong CM, Gupta V, Jung JY, Ha SY, Yang JK, Choi YH.Poult Sci10.1016/j.psj.2023.1024982023Broiler, Gene Expression, Cecum Microbiota, Cyclic Heat Stress, Solubles From Steam-exploded Pine Particles, Chickens, Gastrointestinal Microbiome36739799
Culturing the Chicken Intestinal Microbiota and Potential Application as Probiotics Development.Ma K, Chen W, Lin XQ, Liu ZZ, Wang T, Zhang JB, Zhang JG, Zhou CK, Gao Y, Du CT, Yang YJ.Int J Mol Sci10.3390/ijms240330452023Chicken, Culturing, Intestinal Microbiota, Anti-s. Pullorum Infection, Probiotic Development, Probiotics, Gastrointestinal Microbiome, Limosilactobacillus reuteri36769368
Combined effects of sodium butyrate and xylo-oligosaccharide on growth performance, anti-inflammatory and antioxidant capacity, intestinal morphology and microbiota of broilers at early stage.Deng F, Tang S, Zhao H, Zhong R, Liu L, Meng Q, Zhang H, Chen L.Poult Sci10.1016/j.psj.2023.1025852023Immune function, Xylo-oligosaccharide, Sodium butyrate, Antioxidant capacity, Gut Microbiota, Antioxidants, Microbiota36913758
The microbiome types of colorectal tissue are potentially associated with the prognosis of patients with colorectal cancer.Xu Y, Zhao J, Ma Y, Liu J, Cui Y, Yuan Y, Xiang C, Ma D, Liu H.Front Microbiol10.3389/fmicb.2023.11008732023Survival, Pathogenic bacteria, Colorectal Cancer, Prognostic Biomarkers, Tissue Microbe37025624
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Starter culture growth dynamics and sensory properties of fermented oat drink.Kutt ML, Orgusaar K, Stulova I, Priidik R, Pismennoi D, Vaikma H, Kallastu A, Zhogoleva A, Morell I, Krisciunaite T.Heliyon10.1016/j.heliyon.2023.e156272023Growth dynamics, Sensory Profile, Dairy Alternatives, Fermented Oat Drink, Starter Consortium, Vegan Starter Cultures37180934
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Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product.Shangpliang HNJ, Tamang JP.Int J Food Microbiol10.1016/j.ijfoodmicro.2023.1103002023Probiotics, Biomarkers, Shotgun Metagenomics, Dahi, Metagenome-assembled Genomes, Spontaneously Fermented Milk Product, Lactococcus lactis, Lactobacillus delbrueckii, Cultured Milk ProductsGenetics37364321
Potential role of intratumor bacteria outside the gastrointestinal tract: More than passengers.Liu Z, Hong LL, Ling ZQ.Cancer Med10.1002/cam4.62982023Intracellular bacteria, carcinogenesis, Tumor Microenvironment, Bacterial-mediated Cancer Therapy, Intratumor Bacteria, Neoplasms, Microbiota37377377
Efficient Mining of Anticancer Peptides from Gut Metagenome.Ma Y, Liu X, Zhang X, Yu Y, Li Y, Song M, Wang J.Adv Sci (Weinh)10.1002/advs.2023001072023Cancer therapy, Anticancer Peptides, Gut Microbiome, Multi-center Mining, Tumour Inhibitors, Neoplasms, Antineoplastic Agents37382183
Biochemical Recurrence in Prostate Cancer Is Associated with the Composition of Lactobacillus: Microbiome Analysis of Prostatic Tissue.Kim JH, Seo H, Kim S, Ul-Haq A, Rahim MA, Jo S, Song HY, Song YS.Int J Mol Sci10.3390/ijms2413104232023Drug resistance, Biomarker, Cancer Stem Cells, Cancer Prevention, Tumor Microenvironment, Therapeutic Targets, Prostate Carcer, Carcinoma, Prostatic Neoplasms, Microbiota37445601
Lactiplantibacillus plantarum, lactiplantibacillus pentosus and inulin meal inclusion boost the metagenomic function of broiler chickens.Ferrocino I, Biasato I, Dabbou S, Colombino E, Rantsiou K, Squara S, Gariglio M, Capucchio MT, Gasco L, Cordero CE, Liberto E, Schiavone A, Cocolin L.Anim Microbiome10.1186/s42523-023-00257-52023Lactic acid bacteria, Microbiota, Probiotic, Broiler chickens, inulin, Prebiotic37537673
Potential Ability of Probiotics in the Prevention and Treatment of Colorectal Cancer.Zhao J, Liao Y, Wei C, Ma Y, Wang F, Chen Y, Zhao B, Ji H, Wang D, Tang D.Clin Med Insights Oncol10.1177/117955492311882252023Immunotherapy, Probiotics, Colorectal Cancer, Gut Barrier, Microbiome37601319
Diversity of the Microbiota of Traditional Izmir Tulum and Izmir Brined Tulum Cheeses and Selection of Potential Probiotics.Guley Z, Fallico V, Cabrera-Rubio R, O'Sullivan D, Marotta M, Pennone V, Smith S, Beresford T.Foods10.3390/foods121834822023Streptococcus thermophilus, Probiotics, High-throughput Sequencing, Streptococcus Infantarius, Cheese Microbiota, Lacticaseibacillus Paracasei37761191
Lactobacillus gallinarum-derived metabolites boost anti-PD1 efficacy in colorectal cancer by inhibiting regulatory T cells through modulating IDO1/Kyn/AHR axis.Fong W, Li Q, Ji F, Liang W, Lau HCH, Kang X, Liu W, To KK, Zuo Z, Li X, Zhang X, Sung JJ, Yu J.Gut10.1136/gutjnl-2023-3295432023Immunotherapy, Probiotics, Colorectal Cancer, Lactobacillus, Colorectal Neoplasms, Kynurenine, Immune Checkpoint Inhibitors37770127
Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways.Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD.iScience10.1016/j.isci.2023.1080042023Genomics, Microbial Metabolism, Microbial Genomics, Geographic AreasGenetics37841598Metabolism
Probiotics intervention in colorectal cancer: From traditional approaches to novel strategies.Ha S, Zhang X, Yu J.Chin Med J (Engl)10.1097/cm9.00000000000029552024Colorectal Neoplasms, Probiotics, Microbiota, Gastrointestinal Microbiome38031348
Contact with adult hens affects the composition of skin and respiratory tract microbiota in newly hatched chicks.Faldynova M, Prikrylova H, Sebkova A, Volf J, Karasova D, Crhanova M, Babak V, Rychlik I.Poult Sci10.1016/j.psj.2023.1033022024Trachea, Chicken, SKin, Caecum, Respiratory Tract Microbiota, Chickens, Microbiota38052128
Carbohydrate-active enzyme profiles of Lactiplantibacillus plantarum strain 84-3 contribute to flavor formation in fermented dairy and vegetable products.Liang T, Jiang T, Liang Z, Zhang N, Dong B, Wu Q, Gu B.Food Chem X10.1016/j.fochx.2023.1010362023Microorganism, Flavor, Bacteriophages, Fermented Foods, Cazymes Profiles, Lactiplantibacillus Plantarum 84-338059176
Differential cytokine profiling and microbial species involved in cecal microbiota modulations in SPF chicks immunized with a dual vaccine against Salmonella Typhimurium infection.Jan TR, Lin CS, Yang WY.Poult Sci10.1016/j.psj.2023.1033342024Salmonella typhimurium, Immune response, Layers, Gut Microbiota, Full-length 16S Rrna Metagenomics, Salmonella Infections, Animal, Poultry Diseases, Salmonella Vaccines, MicrobiotaGenetics38104411Phylogeny
Gut microbiota in the short-beaked echidna (Tachyglossus Aculeatus) shows stability across gestation.Buthgamuwa I, Fenelon JC, Roser A, Meer H, Johnston SD, Dungan AM.Microbiologyopen10.1002/mbo3.13922023Conservation, Coevolution, Microbiome, Monotreme, Echidna, Microbiota, Gastrointestinal Microbiome, Tachyglossidae38129978
Evaluation of a Method for Standardized Antimicrobial Susceptibility Testing with Mycoplasma hyorhinis Field Isolates.Kabisch L, Schink AK, Hoeltig D, Verspohl J, Gyuranecz M, Spergser J, Kehrenberg C, Schwarz S.Microorganisms10.3390/microorganisms111228812023Mycoplasma hyorhinis, Antimicrobial Susceptibility Testing (Ast), Broth Microdilution, Standardized Methodology38138024
Lactobacillus acidophilus suppresses non-alcoholic fatty liver disease-associated hepatocellular carcinoma through producing valeric acid.Lau HC, Zhang X, Ji F, Lin Y, Liang W, Li Q, Chen D, Fong W, Kang X, Liu W, Chu ES, Ng QW, Yu J.EBioMedicine10.1016/j.ebiom.2023.1049522024Lactobacillus acidophilus, Valeric Acid, Cancer Prevention, Rho-gtpase Pathway, Non-alcoholic Fatty Liver Disease-associated Hepatocellular Carcinoma, Carcinoma, Hepatocellular, Liver Neoplasms, Pentanoic Acids, Probiotics, Non-alcoholic Fatty Liver Disease38176203
Lactococcus lactis HkyuLL 10 suppresses colorectal tumourigenesis and restores gut microbiota through its generated alpha-mannosidase.Su ACY, Ding X, Lau HCH, Kang X, Li Q, Wang X, Liu Y, Jiang L, Lu Y, Liu W, Ding Y, Cheung AH, To KF, Yu J.Gut10.1136/gutjnl-2023-3308352024Probiotics, Colorectal Cancer, Colonic Microflora, Feces, Lactococcus lactis, Colorectal Neoplasms, alpha-Mannosidase, Probiotics, Carcinogenesis, Gastrointestinal Microbiome38599786
Rapid identification of lactic acid bacteria at species/subspecies level via ensemble learning of Ramanomes.Ren Y, Zheng Y, Wang X, Qu S, Sun L, Song C, Ding J, Ji Y, Wang G, Zhu P, Cheng L.Front Microbiol10.3389/fmicb.2024.13611802024Deep Learning, Fermented Food, Rapid Classification, Ramanome, Lab Species/SubspeciesPhylogeny38650881
Host factors are associated with vaginal microbiome structure in pregnancy in the ECHO Cohort Consortium.McKee K, Bassis CM, Golob J, Palazzolo B, Sen A, Comstock SS, Rosas-Salazar C, Stanford JB, O'Connor T, Gern JE, Paneth N, Dunlop AL, ECHO Cohort Consortium.Sci Rep10.1038/s41598-024-62537-72024Pregnancy, Meta-analysis, Host Factors, 16S Rrna Gene Amplicon Sequence Data, Echo Cohort, Vaginal Microbiota Structure, Vagina, RNA, Ribosomal, 16S, MicrobiotaPhylogeny38782975Pathogenicity
The Causal Effect of Gut Microbiota and Plasma Metabolome on Lung Cancer and the Heterogeneity across Subtypes: A Mendelian Randomization Study.Zeng J, Yi B, Chang R, Li J, Zhu J, Yu Z, Li X, Gao Y.J Pers Med10.3390/jpm140504532024Lung cancer, Biomarker, Gut Microbiota, Mendelian Randomization, Plasma Metabolome38793035
Black rice diet alleviates colorectal cancer development through modulating tryptophan metabolism and activating AHR pathway.Wang L, Tu YX, Chen L, Yu KC, Wang HK, Yang SQ, Zhang Y, Zhang SJ, Song S, Xu HL, Yin ZC, Feng MQ, Yue JQ, Huang XH, Tang T, Wei SZ, Liang XJ, Chen ZX.Imeta10.1002/imt2.1652024Colorectal Cancer, Gut Microbiome, Gut Metabolites, Black Rice Diet38868519
Gut-derived metabolite 3-methylxanthine enhances cisplatin-induced apoptosis via dopamine receptor D1 in a mouse model of ovarian cancer.Mai Z, Han Y, Liang D, Mai F, Zheng H, Li P, Li Y, Ma C, Chen Y, Li W, Zhang S, Feng Y, Chen X, Wang Y.mSystems10.1128/msystems.01301-232024Cisplatin, Ovarian cancer, Gut Microbiota, Dopamine Receptor D1, 3-Methylxanthine, Ovarian Neoplasms, Cisplatin, Receptors, Dopamine D1, Apoptosis, Gastrointestinal Microbiome38899930
Recent Progress of Oral Functional Nanomaterials for Intestinal Microbiota Regulation.Li W, Zhan M, Wen Y, Chen Y, Zhang Z, Wang S, Tian D, Tian S.Pharmaceutics10.3390/pharmaceutics160709212024Therapy, Immunity, Oral administration, Gut Microbiota, Nanomaterial39065618
Beyond the Gut: The intratumoral microbiome's influence on tumorigenesis and treatment response.Zhang H, Fu L, Leiliang X, Qu C, Wu W, Wen R, Huang N, He Q, Cheng Q, Liu G, Cheng Y.Cancer Commun (Lond)10.1002/cac2.125972024Immunotherapy, Analysis methods, Treatment Application, Intratumoral Microbiome, Neoplasms, Carcinogenesis, Gastrointestinal Microbiome39087354
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Gut bacteria are essential for development of an invasive bark beetle by regulating glucose transport.Liu F, Ye F, Yang Y, Kang Z, Liu Y, Chen W, Wang S, Kou H, Kang L, Sun J.Proc Natl Acad Sci U S A10.1073/pnas.24108891212024Development, Hypoxia, Red turpentine beetle, Gut Bacteria, D-glucose Transport, Glucose, Gastrointestinal Microbiome, Coleoptera39110737
Synthesis of Second-Generation Analogs of Temporin-SHa Peptide Having Broad-Spectrum Antibacterial and Anticancer Effects.Khan AI, Nazir S, Haque MNU, Maharjan R, Khan FA, Olleik H, Courvoisier-Dezord E, Maresca M, Shaheen F.Antibiotics (Basel)10.3390/antibiotics130807582024Anticancer, Antimicrobial peptide, Temporin Sha39200058
A probiotic Limosilactobacillus fermentum GR-3 mitigates colitis-associated tumorigenesis in mice via modulating gut microbiome.Zhou T, Wu J, Khan A, Hu T, Wang Y, Salama ES, Su S, Han H, Jin W, Li X.NPJ Sci Food10.1038/s41538-024-00307-5202439242568
Dynamic response of the intestinal microbiome to Eimeria maxima-induced coccidiosis in chickens.Liu J, Guo J, Whitmore MA, Tobin I, Kim DM, Zhao Z, Zhang G.Microbiol Spectr10.1128/spectrum.00823-242024Eimeria, Chickens, Microbiota, Coccidiosis, Intestinal Inflammation, Chickens, Eimeria, Coccidiosis, Poultry Diseases, RNA, Ribosomal, 16S, Gastrointestinal MicrobiomePathogenicity39248475Phylogeny
Unveiling the Brazilian kefir microbiome: discovery of a novel Lactobacillus kefiranofaciens (LkefirU) genome and in silico prospection of bioactive peptides with potential anti-Alzheimer properties.Silva MH, Batista LL, Malta SM, Santos ACC, Mendes-Silva AP, Bonetti AM, Ueira-Vieira C, Dos Santos AR.BMC Genomics10.1186/s12864-024-10695-32024metagenome, Kefir, Next Generation Dna Sequencing, Lactobacillus kefiranofaciens, Peptidome, Lactobacillus, Alzheimer Disease, Peptides, Genome, Bacterial, Microbiota, KefirGenetics39304820
Intratumoral microbiota in colorectal cancer: focus on specific distribution and potential mechanisms.Long J, Wang J, Xiao C, You F, Jiang Y, Li X.Cell Commun Signal10.1186/s12964-024-01831-32024Colorectal Cancer, Tumor Microenvironment, Intratumoral Microbiota, Specific Distribution, Colorectal Neoplasms39327582
Blautia coccoides and its metabolic products enhance the efficacy of bladder cancer immunotherapy by promoting CD8+ T cell infiltration.Wang B, Shangguan W, Li W, Xie M, Yu Y, Yang Q, Sun Q, Xue J, Zhu Z, Zhu Y, Wu P.J Transl Med10.1186/s12967-024-05762-y2024Trigonelline, Gut Microbiota, Anti-pd-1 Immunotherapy, Blautia Coccoides, CD8-Positive T-Lymphocytes, Immunotherapy, Urinary Bladder Neoplasms, Gastrointestinal Microbiome39449013
From microbes to medicine: harnessing the power of the microbiome in esophageal cancer.Liu X, Li B, Liang L, Han J, Mai S, Liu L.Front Immunol10.3389/fimmu.2024.14509272024Drug resistance, Esophageal cancer, Porphyromonas gingivalis, Fusobacterium nucleatum, Microbiota Dysbiosis, Precision Oncology, Esophageal Neoplasms, Dysbiosis, Gastrointestinal Microbiome39600698
Anticancer effect of a combinatorial treatment of 5-fluorouracil and cell extract of some probiotic lactobacilli strains isolated from camel milk on colorectal cancer cells.Salek S, Moazamian E, Mohammadi Bardbori A, Shamsdin SA.Folia Microbiol (Praha)10.1007/s12223-024-01228-22025Cytokine, 5-fluorouracil, Probiotic, Anticancer activity, Colorectal Cancer, lactobacilli, Milk, Lactobacillus, Colorectal Neoplasms, Fluorouracil, Cell Extracts, Antineoplastic Agents, Probiotics39702737
Changes in the intestinal microbiota of broiler chicken induced by dietary supplementation of the diatomite-bentonite mixture.Wesierska E, Micek P, Adamski MG, Gondek K, Lis M, Trela M, Wojtysiak D, Kowal J, Wyrobisz-Papiewska A, Kunstman G, Mosiolek S, Smoron K.BMC Vet Res10.1186/s12917-024-04439-42025Poultry, Intestine, Health, Microbiota, Diatomite, Bentonite, Chickens, Bentonite, Diatomaceous Earth, Gastrointestinal Microbiome39799366
Impact of commercial gut health interventions on caecal metagenome and broiler performance.Pangga GM, Star-Shirko B, Psifidi A, Xia D, Corcionivoschi N, Kelly C, Hughes C, Lavery U, Richmond A, Ijaz UZ, Gundogdu O.Microbiome10.1186/s40168-024-02012-72025Probiotics, Shotgun sequencing, Metagenomics, Gut Health, Broiler Performance, Chicken Gut Microbiome, Cecum, Chickens, Metagenome, Gastrointestinal MicrobiomeGenetics39881387
Crosstalk between gut microbiotas and fatty acid metabolism in colorectal cancer.Zhang H, Tian Y, Xu C, Chen M, Xiang Z, Gu L, Xue H, Xu Q.Cell Death Discov10.1038/s41420-025-02364-5202540011436
Influence of fermented milk permeate containing antimicrobial Lactobacillus and galactooligosaccharides on growth performance and health parameters in neonatal piglets.Badaras S, Starkute V, Mockus E, Ruzauskas M, Klupsaite D, Mozuriene E, Dailidaviciene J, Dauksiene A, Vadopalas L, Bartkiene E.Front Vet Sci10.3389/fvets.2025.15011172025Immunoglobulins, Volatile compounds, Antimicrobials, By-products Bioconversion, Metataxanomic40051978
Epacadostat Overcomes Cetuximab Resistance in Colorectal Cancer by Targeting IDO-Mediated Tryptophan Metabolism.Zhou Y, Tao Q, Luo C, Chen J, Chen G, Sun J.Cancer Sci10.1111/cas.700572025Colorectal Cancer, Cetuximab, Tumor Microenvironment, IDO, Tryptophan Metabolism, Epacadostat, Colorectal Neoplasms, Tryptophan, Drug Resistance, Neoplasm, Indoleamine-Pyrrole 2,3,-Dioxygenase, CetuximabMetabolism40103010
Research in etiology of Floppy Kid Syndrome.Cheng C, Zheng Y, Wang X, Tao J, Cheng D.Front Vet Sci10.3389/fvets.2025.15579512025Etiology, Goat, Microbiota, Metagenomics, Floppy Kid SyndromeGenetics40110433
Deep culturing the fecal microbiota of healthy laying hens.Feng Z, Lorenc N, O'Brien B, Sun G, Li Z, Jung D, Ronholm J.Anim Microbiome10.1186/s42523-025-00395-y2025Poultry, Laying hen, layer, Microbiota, Metagenomics, Deep CulturingGenetics40148927
Antimicrobial peptide plectasin recombinantly produced in Escherichia coli disintegrates cell walls of gram-positive bacteria, as proven by transmission electron and atomic force microscopy.Muller M, Mayrhofer S, Sudjarwo WAA, Gibisch M, Tauer C, Berger E, Brocard C, Toca-Herrera JL, Striedner G, Hahn R, Cserjan-Puschmann M.J Bacteriol10.1128/jb.00456-242025Purification, E. coli, Disulfide Bridges, Recombinant Peptides, Caspon-tag, Cell Wall, Escherichia coli, Gram-Positive Bacteria, Peptides, Anti-Bacterial Agents, Antimicrobial PeptidesEnzymology40183576
The Encapsulation Strategies for Targeted Delivery of Probiotics in Preventing and Treating Colorectal Cancer: A Review.Zhong H, Jiang J, Hussain M, Zhang H, Chen L, Guan R.Adv Sci (Weinh)10.1002/advs.2025003042025Probiotics, Colorectal Cancer, Nanoencapsulation, Targeted Delivery Systems, Protective Mechanism, Colorectal Neoplasms, Drug Delivery Systems, Probiotics40192333
Comparative Analysis of the Gut Microbiota of Thai Indigenous Chicken Fed House Crickets.T-Thienprasert NP, Jaithon T, Klomkliew P, Chanchaem P, Suwanasopee T, Koonawootrittriron S, Kovitvadhi A, Chundang P, Pongprayoon P, Kityakarn S, Luksirikul P, Payungporn S.Animals (Basel)10.3390/ani150710702025Probiotics, Gut Microbiota, Gut Health, Thai Indigenous Chicken, House Crickets40218462
Characterization and genome analysis of the novel virulent Burkholderia phage Bm1, which is active against pan-drug-resistant Burkholderia multivorans.Rubalskii E, Sedlacek L, Hegermann J, Knegendorf L, Salmoukas C, Mueller C, Schwerk N, Schluter D, Ruhparwar A, Kuehn C, Ruemke S.Arch Virol10.1007/s00705-025-06282-w2025Burkholderia, Bacteriophages, Drug Resistance, Multiple, Bacterial, Genome, ViralGenetics40240564
Glycyrrhiza uralensis extract supplementation mitigated the negative effects of prolonged low-dose exposure to Deoxynivalenol and Zearalenone on growth performance and intestinal health of broiler chickens.Chen Y, Zhang G, Li J, Li X, Jiang S, Zha Xi Y, Guo Y, Lu J.Front Vet Sci10.3389/fvets.2025.15702652025Growth performance, Broiler chickens, Zen, Don, Intestine Health, Glycyrrhiza Uralensis Extract40290476
Susceptibility of Lactobacillaceae Strains to Aminoglycoside Antibiotics in the Light of EFSA Guidelines.Dec M, Herman-Ostrzyzek K, Zomer A, Urban-Chmiel R.Life (Basel)10.3390/life150507322025Lactobacillaceae, Probiotics, Aminoglycosides, Feed additives, Susceptibility Testing, Efsa40430158
Impact of Enterococcus faecium Kimate-X on Reducing Stress in Dogs Through Gut Microbiota Modulation.Zhang R, Hu W, Zhong S, Chen W, Chen M, Yu Q.Vet Sci10.3390/vetsci120504122025Stress, Probiotics, Gut Microbiota, Enterococcus faecium, Short-chain Fatty Acids40431505
Exploring the Potential of Novel Animal-Origin Probiotics as Key Players in One Health: Opportunities and Challenges.Gorzelanna Z, Mamrot A, Bedkowska D, Bubak J, Miszczak M.Int J Mol Sci10.3390/ijms261151432025Human, Animal, Livestock, Probiotics, Therapeutic Potential, Beneficial Bacteria, Companion Animals, Microbiota-host Interaction, Animal-Derived Strains, Probiotics, One HealthPathogenicity40507953
Gut Parabacteroides distasonis-derived Indole-3-Acetic Acid Promotes Phospholipid Remodeling and Enhances Ferroptosis Sensitivity via the AhR-FASN Axis in Bladder Cancer.Li W, Shangguan W, Huang W, Zhao J, Zhu Y, Xie M, Yu Y, Yang Q, Zheng J, Yang L, Sun Q, Li L, Shi X, Xiao Y, Huang H, Cheng B, Wu P.Adv Sci (Weinh)10.1002/advs.2025046882025Bladder cancer, Parabacteroides Distasonis, Aryl Hydrocarbon Receptor, Ferroptosis, Indoleacetic Acids, Phospholipids, Receptors, Aryl Hydrocarbon, Urinary Bladder Neoplasms, Fatty Acid Synthase, Type I, Ferroptosis40557796
Eubacterium limosum modulates tumor microenvironments and produces antitumor metabolites active against colorectal cancer.Lu Y, Lan R, Fan Q, Tang H, Hu D, Zhang S, Lin X, Wang R, Zhao R, Sun H, Liu L, Xu J.ISME J10.1093/ismejo/wraf1302025Metabolites, Colorectal Cancer, Tumor Microenvironment, Gut Microbiota, Eubacterium Limosum, Eubacterium, Colorectal Neoplasms, Antineoplastic Agents, Probiotics, Tumor Microenvironment40568973
Tryptophan Metabolite Indole-3-Aldehyde Induces AhR and c-MYC Degradation to Promote Tumor Immunogenicity.Cui L, Wang Z, Guo Z, Zhang H, Liu Y, Zhang H, Jin H, Xu F, Wang X, Xie C, Guo H, Wang T, Lin Y, Zhao Q, Zhou P, Tan J, Bei JX, Huang P, Liu J, Xia X.Adv Sci (Weinh)10.1002/advs.2024095332025AhR, Tryptophan Metabolism, Tumor Immunogenicity, Indole?3?aldehyde, Indoles, Tryptophan, Proto-Oncogene Proteins c-myc, Receptors, Aryl HydrocarbonMetabolism40583248
Purification and characterization of a novel antibacterial peptide against Clostridium perfringens.Novodvorski A, Kong A, Yu H, Lepp D, Brott A, Carere J, Seah S, Gong J.Microbiology (Reading)10.1099/mic.0.0015732025Clostridium perfringens, Antibacterial peptide, SH3 domain, antimicrobial spectrum, Bacillus Velezensis, Bacillus, Clostridium perfringens, Anti-Bacterial Agents, Antimicrobial Peptides40622751
Modeling the weaning diet of piglets with fermented feed material: effects on growth performance and health parameters.Badaras S, Starkute V, Mockus E, Ruzauskas M, Klupsaite D, Mozuriene E, Dailidaviciene J, Dauksiene A, Vadopalas L, Metzler-Zebeli BU, Bartkiene E.Front Vet Sci10.3389/fvets.2025.16162092025Immunoglobulins, Antimicrobials, Metataxonomic, Faeces Bacterial Composition, Faeces Volatile Compounds40678496
Gut-derived Faecalibaculum rodentium exerts anti-cancer effects on colorectal cancer by modulating PDPN-CLEC-2 signaling pathway.Yang X, Liu M, Wang T, Ma X, Guan Z, Ma B, Duan X, Su C.mSystems10.1128/msystems.00148-252025Acetate, Colorectal Cancer, Clec-2, Pdpn, Faecalibaculum Rodentium, Cd8+t-cell Immunity, Colorectal Neoplasms, Membrane Glycoproteins, Gastrointestinal Microbiome40693815
Armenian Hamsters (Nothocricetulus migratorius): A New Host Susceptible to Corynebacterium bovis Infection and Disease.Cheleuitte-Nieves C, Miranda IC, Michelson A, Walton K, Geist GE, Nickerson K, Wipf JR, Carrasco SE, Monette S, Mammone R, Lipman NS.J Am Assoc Lab Anim Sci10.30802/aalas-jaalas-25-0542025Mabs, Monoclonal Antibodies, Maldi-tof, Matrix-assisted Laser Desorption/ionization-time Of Flight, Ish, In Situ Hybridization, Msk, Memorial Sloan Kettering Cancer Center, Dss, Deep Skin Scrape, Fp, Fur Pluck, Wgs, Whole Genomic Sequencing, Pd, Postnatal Day40695468
Lactobacillus gallinarum improves broiler performance by enhancing antioxidant capacity and regulating intestinal microbiota.Zhou X, You Y, Ren L, Akhtar M, Ji H, Wang T, Meng N, Fan X, Yang S, Zhou Z, Xiao Y, Shi D.Poult Sci10.1016/j.psj.2025.1055372025Broiler, Antioxidant capacity, lactobacillus, Intestinal Microbiota, Intestinal Inflammation, Chickens, Lactobacillus, Antioxidants, Probiotics, Gastrointestinal MicrobiomePathogenicity40752199
Akkermansia muciniphila ameliorates chronic stress-induced colorectal tumor growth by releasing outer membrane vesicles.Jin S, Lu Y, Zuo Y, Xu Q, Hao Y, Zuo H, Cui Z, Zhang X, Wang M, Li H, Wang S, Li Y.Gut Microbes10.1080/19490976.2025.25556182025Chronic stress, Colorectal neoplasm, Gut Microbiota, Outer Membrane Vesicles, Akkermansia Muciniphila, Colorectal Neoplasms, Stress, Psychological40922085
Computational microbiome pharmacology analysis elucidates the anti-cancer potential of vaginal microbes and metabolites.Lawore DC, Jena S, Berard AR, Birse K, Lamont A, Mackelprang RD, Noel-Romas L, Perner M, Hou X, Irungu E, Mugo N, Knodel S, Muwonge TR, Katabira E, Hughes SM, Levy C, Calienes FL, Hladik F, Lingappa JR, Burgener AD, Green LN, Brubaker DK.Front Microbiol10.3389/fmicb.2025.16022172025systems biology, Anti-cancer, gynecological cancer, Multi-omics, Vaginal Microbial Community41035891
Fecal microbiome associated with egg production efficiency in laying hens.Chen JW, Wang SY, Yang WY.Anim Biosci10.5713/ab.25.02562025Egg production, lactobacillus, Fecal Microbiome, Firmicutes-to-bacteroidetes Ratio, Full-length 16S Rrna Gene SequencingPhylogeny41132061
Effect of Glycyrrhiza uralensis extract, Lactobacillus acidophilus and their combined supplementation on production performance, immunity, antioxidation and intestinal health in broilers.Lu J, Li S, Wu J, Chen Y, Jiang S, Zhang G.Front Vet Sci10.3389/fvets.2025.16755932025Lactobacillus acidophilus, Production performance, Broiler, Antioxidation, Immunity, Intestinal Health, Glycyrrhiza Uralensis Extract41180229
Effects of Antimicrobial Peptides on the Growth Performance of Squabs Were Investigated Based on Microbiomics and Non-Targeted Metabolomics.Deng L, Yao Y, Li H, Lu Q, Wu R.Animals (Basel)10.3390/ani152130992025Metabolites, Growth performance, Microbiota, Antimicrobial peptides, Intestinal Health, Squab41227430
Serum CA19-9 and CEA levels, serum CAT, GSH, oxidised glutathione levels, 8-dihidro-2'-deoksiguanosina and F2-isoprostanes levels in colorectal cancer patients and Lactobacillus: A randomised double-blind controlled trial.Chen S, Ning W, Zhang J, Wu Z, Zhou H, Liu Y.J Med Biochem10.5937/jomb0-565282025Oxidative stress, p38 MAPK, lactobacillus, Colorectal Cancer, JNK, NRF241281285

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68371Automatically annotated from API 50CH acid
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