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BacDive ID 6642
Type strain
Strain Designation L-1062
Culture col. no. DSM 18080 JCM 18665 LMG 23555 L-1062
NCBI tax ID(s) 375175
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.3 (current version):
version 9.3 (current version)

General

@ref: 7381

BacDive-ID: 6642

DSM-Number: 18080

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Loigolactobacillus backii L-1062 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from spoiled lager beer.

NCBI tax id

  • NCBI tax id: 375175
  • Matching level: species

strain history

@refhistory
7381<- I. Bohak; L-1062
67770LMG 23555 <-- I. Bohak L1062.

doi: 10.13145/bacdive6642.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Loigolactobacillus
  • species: Loigolactobacillus backii
  • full scientific name: Loigolactobacillus backii (Tohno et al. 2013) Zheng et al. 2020

  • synonyms

    @refsynonym
    20215Lactobacillus backi
    20215Lactobacillus backii

@ref: 7381

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Loigolactobacillus

species: Loigolactobacillus backii

full scientific name: Loigolactobacillus backii (Tohno et al. 2013) Zheng et al. 2020

strain designation: L-1062

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31094positive3 µm0.7 µmrod-shapedno
125438no90.5
125438positive91.782

pigmentation

  • @ref: 31094
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7381DIFCO RAKA-RAY NO.3 MEDIUM (DSMZ Medium 1047)yeshttps://mediadive.dsmz.de/medium/1047Name: DIFCO RAKA-RAY NO.3 MEDIUM (DSMZ Medium 1047) Composition: Tryptone 20.0 g/l Agar 16.0 g/l Maltose 10.0 g/l Yeast extract 5.0 g/l Glucose 5.0 g/l Fructose 5.0 g/l Potassium Glutamate 2.5 g/l Potassium Aspartate 2.5 g/l Dipotassium Phosphate 2.0 g/l Betaine Hydrochloride 2.0 g/l Diammonium Citrate 2.0 g/l Liver Concentrate 1.0 g/l Magnesium sulfate 0.98 g/l N-Acetylglucosamine 0.5 g/l Manganese Sulfate 0.42 g/l Distilled water
7381PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)yeshttps://mediadive.dsmz.de/medium/231Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
7381positivegrowth30
31094positivegrowth10-37
67770positivegrowth30

culture pH

  • @ref: 31094
  • ability: positive
  • type: growth
  • pH: 3.5-8.0
  • PH range: acidophile

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
7381microaerophile
31094facultative anaerobe
125439obligate aerobe99.1

spore formation

  • @ref: 31094
  • spore formation: no

halophily

  • @ref: 31094
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 4.0-6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3109428757fructose+carbon source
3109417234glucose+carbon source
3109429864mannitol+carbon source
3109437684mannose+carbon source
31094506227N-acetylglucosamine+carbon source
3109417814salicin+carbon source
3109430911sorbitol+carbon source
310944853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

enzymes

  • @ref: 31094
  • value: acid phosphatase
  • activity: +
  • ec: 3.1.3.2

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
7381-----------+++----++--+-+++-----------------------
7381-----------+++--------+--++-----------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7381spoiled lager beerBavariaGermanyDEUEurope
67770Lagar beersouth BavariaGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_4331.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_2172;97_2628;98_3258;99_4331&stattab=map
  • Last taxonomy: Loigolactobacillus
  • 16S sequence: LC521991
  • Sequence Identity:
  • Total samples: 10605
  • soil counts: 1069
  • aquatic counts: 963
  • animal counts: 8029
  • plant counts: 544

Safety information

risk assessment

  • @ref: 7381
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
7381Lactobacillus backii gene for 16S ribosomal RNA, partial sequence, strain: JCM 18665AB7796481491nuccore375175
67770Lactobacillus backii JCM 18665 gene for 16S rRNA, partial sequenceLC5219911505nuccore375175

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Loigolactobacillus backii JCM 18665GCA_003946275contigncbi375175
66792Lactobacillus backii strain JCM 18665375175.92wgspatric375175

GC content

@refGC-contentmethod
738140.9high performance liquid chromatography (HPLC)
3109440.9
6777037high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes91.782yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no84.868yes
125438spore-formingspore-formingAbility to form endo- or exosporesno85.849yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no94.371no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno94.125no
125438motile2+flagellatedAbility to perform flagellated movementno90.5yes
125439BacteriaNetspore_formationAbility to form endo- or exosporesno89.7
125439BacteriaNetmotilityAbility to perform movementno58.2
125439BacteriaNetgram_stainReaction to gram-stainingpositive77
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99.1

External links

@ref: 7381

culture collection no.: DSM 18080, JCM 18665, LMG 23555

straininfo link

  • @ref: 76116
  • straininfo: 297669

literature

  • topic: Phylogeny
  • Pubmed-ID: 23687059
  • title: Description of Lactobacillus iwatensis sp. nov., isolated from orchardgrass (Dactylis glomerata L.) silage, and Lactobacillus backii sp. nov.
  • authors: Tohno M, Kitahara M, Irisawa T, Masuda T, Uegaki R, Ohkuma M, Tajima K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.051920-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, Cell Wall/chemistry, DNA, Bacterial/genetics, Dactylis/*microbiology, Fatty Acids/analysis, Japan, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Silage/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
7381Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18080)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18080
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31094Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2742328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76116Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297669.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1

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