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BacDive ID 7319
Type strain
Strain Designation CL63
Culture col. no. DSM 7069 ATCC 49174 CIP 108988 CL63 LMG 16222
NCBI tax ID(s) 221276
Links
For citation purpose refer to the digital object identifier (doi) of the current version.

Archive

version 9.2 (current version):
version 9.2 (current version)

General

@ref: 2970

BacDive-ID: 7319

DSM-Number: 7069

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Curtobacterium plantarum CL63 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from soybean leaves, Glycine max.

NCBI tax id

  • NCBI tax id: 221276
  • Matching level: species

strain history

@refhistory
2970<- ATCC <- J.M. Dunleavy, CL63
121857CIP <- 2005, DSMZ <- ATCC <- J.M. Dunleavy, Iowa State Univ., Ames, Iowa, USA: strain CL63

doi: 10.13145/bacdive7319.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Curtobacterium
  • species: Curtobacterium plantarum
  • full scientific name: Curtobacterium plantarum Dunleavy 1989

@ref: 2970

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Curtobacterium

species: Curtobacterium plantarum

full scientific name: Curtobacterium plantarum Dunleavy 1989

strain designation: CL63

type strain: yes

Morphology

cell morphology

  • @ref: 121857
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 121857

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2970TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
36773MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121857CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
121857CIP Medium 338yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=338

culture temp

@refgrowthtypetemperature
2970positivegrowth28
36773positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 121857
  • oxygen tolerance: facultative anaerobe

murein

  • @ref: 2970
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12185717632nitrate+reduction
12185716301nitrite-reduction
68371Potassium 5-ketogluconate-builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117754glycerol-builds acid from
68371Potassium 2-ketogluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol+builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose+builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

metabolite production

  • @ref: 121857
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121857oxidase-
121857alcohol dehydrogenase-1.1.1.1
121857catalase+1.11.1.6
121857lysine decarboxylase-4.1.1.18
121857ornithine decarboxylase-4.1.1.17
121857urease-3.5.1.5
68382alpha-chymotrypsin-3.4.21.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121857-+++-+----+++----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121857---+++---+/-+++-+-+/-+---+-+++-+--++------------+-+/-+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
2970soybean leaves, Glycine maxGlycine maxIowaUSAUSANorth America
121857Plant, Soybean leavesIowaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1960.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_310;97_507;98_583;99_1960&stattab=map
  • Last taxonomy: Pantoea
  • 16S sequence: JN175348
  • Sequence Identity:
  • Total samples: 1833
  • soil counts: 48
  • aquatic counts: 214
  • animal counts: 1357
  • plant counts: 214

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
29701Risk group (German classification)
1218571Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Curtobacterium plantarum 16S-23S ribosomal RNA intergenic spacer region, partial sequenceAY191511671nuccore221276
20218Curtobacterium plantarum strain CIP 108988 16S ribosomal RNA gene, complete sequenceJN1753481440nuccore221276

GC content

  • @ref: 2970
  • GC-content: 76
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 2970

culture collection no.: DSM 7069, ATCC 49174, CIP 108988, LMG 16222

straininfo link

  • @ref: 76769
  • straininfo: 8241

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2970Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7069)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7069
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36773Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6678
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76769Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID8241.1StrainInfo: A central database for resolving microbial strain identifiers
121857Curators of the CIPCollection of Institut Pasteur (CIP 108988)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108988

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