Cite this strain

Gordonia sinesedis (DSM 44455, NCIMB 13802, J72)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 10608

Type strain

Strain Designation J72

Culture col. no. DSM 44455 NCIMB 13802 J72 NBRC 110696 CIP 108187 1 more

NCBI tax ID(s) 161153

Special Collections DSMZ JCM CIP

Links

Name and taxonomic classification

Gordonia sinesedis J72 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative rod-shaped obligate aerobe mesophilic 16S sequence Bacteria

SI-ID 60986

NCIMB 13802, DSM 44455, JCM 12126, CIP 108187

Last LPSN update 2024-12-09 10:44:16

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia sinesedis

Full scientific name Gordonia sinesedis Maldonado et al. 2003

BacDive ID	Other strains from **Gordonia sinesedis** (1)	Type strain
23154	G. sinesedis KF9/14, N56, NS56, SD256, DSM 45847

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
122630	negative	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11782	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
34316	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122630	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11782	positive	growth	28	mesophilic
34316	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
122630	positive	growth	25-37	mesophilic
122630	negative	growth	10
122630	negative	growth	41
122630	negative	growth	45

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122630	NaCl	positive	growth	0-4 %
122630	NaCl		growth	6 %
122630	NaCl		growth	8 %
122630	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-9(H₂)

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122630	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122630	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
122630	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122630	caseinase	-	3.4.21.50
122630	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122630	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122630	gamma-glutamyltransferase	+	2.3.2.2
122630	gelatinase	-
122630	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122630	lipase	-
68382	lipase (C 14)	+		from API zym
122630	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122630	ornithine decarboxylase	-	4.1.1.17
122630	oxidase	-
122630	phenylalanine ammonia-lyase	-	4.3.1.24
122630	protease	-
68382	trypsin	-	3.4.21.4	from API zym
122630	tryptophan deaminase	-
122630	tween esterase	-
122630	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
122630	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122630	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
122630	15688 ChEBI	acetoin	-
122630	17234 ChEBI	glucose

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122630	16947 ChEBI	citrate	-	carbon source
122630	4853 ChEBI	esculin	-	hydrolysis
122630	606565 ChEBI	hippurate	+	hydrolysis
122630	17632 ChEBI	nitrate	-	reduction
122630	17632 ChEBI	nitrate	-	respiration
122630	16301 ChEBI	nitrite	-	reduction

Oxygen tolerance

122630

Oxygen toleranceobligate aerobe

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122630	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122630	not determinedn.d.	-	+	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location
11782	soil	near the river Thames
67770	Soil near the River Thames
122630	Environment, Soil

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
11782	1	Risk group (German classification) According to TRBA 466
122630	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11782	Gordonia sinesedis 16S ribosomal RNA gene, partial sequence	AF380834	1474		161153

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gordonia sinesedis sp. nov., a novel soil isolate.	Maldonado LA, Stainsby FM, Ward AC, Goodfellow M	Antonie Van Leeuwenhoek	10.1023/a:1022918102948	2003

Straininfo Link

@ref	Straininfo	Culture collections
79882	60986	NCIMB 13802, DSM 44455, JCM 12126, CIP 108187

Culture collection no.

Culture collection no.
DSM 44455
NCIMB 13802
J72
NBRC 110696
CIP 108187
JCM 12126

References

#11782	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44455
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34316	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#79882	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID60986.1 )
#122630	Collection of Institut Pasteur ; Curators of the CIP; CIP 108187

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