Cite this strain

Nocardioides dilutus (DSM 19318, KCTC 19288, MSL 11)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11134

Type strain

Culture col. no. DSM 19318 KCTC 19288 MSL 11 JCM 31491

NCBI tax ID(s) 433652

Special Collections DSMZ JCM KCTC

Links

Name and taxonomic classification

Nocardioides dilutus DSM 19318 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from farming field.

Gram-positive aerobe mesophilic 16S sequence Bacteria

SI-ID 401771

DSM 19318

Last LPSN update 2024-12-09 10:44:20

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides dilutus

Full scientific name Nocardioides dilutus corrig. Dastager et al. 2009

Synonyms (1)

Nocardioides dilutes

Morphology

Cell morphology

67771

Gram stainpositive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8033	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8033	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-8(H₄)

Oxygen tolerance

67771

Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8033	farming field	Bikeum island	Republic of Korea	KOR	Asia
67770	Soil	Bigeum Island	Republic of Korea	KOR	Asia
67771	From farming field	Bikeum island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF466121 (>99% sequence identity) for Nocardioides dilutus from Microbeatlas

Aquatic Samples	588
Soil Samples	3359
Animal Samples	732
Plant Samples	962
Total Samples	5641

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
8033	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)
8033	71.8
67770	71.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8033	Nocardioides dilutus strain MSL-11 16S ribosomal RNA gene, partial sequence	EF466121	1418		433652

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides dilutes sp. nov. isolated from soil in Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Curr Microbiol	10.1007/s00284-008-9125-9	2008

Straininfo Link

@ref	Straininfo	Culture collections
80383	401771	DSM 19318

Culture collection no.

Culture collection no.
DSM 19318
KCTC 19288
MSL 11
JCM 31491

References

#8033	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19318
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#80383	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401771.1 )

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