Cite this strain

Paenibacillus hunanensis (DSM 22170, ACCC 10718, CGMCC 1.8907)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11647

Type strain

Strain Designation FeL05

Culture col. no. DSM 22170 ACCC 10718 CGMCC 1.8907 CIP 110610 FeL05

NCBI tax ID(s) 539262

Special Collections DSMZ CIP Literature strains

Links

Name and taxonomic classification

Paenibacillus hunanensis FeL05 is an aerobe, spore-forming, mesophilic bacterium that was isolated from seeds of hybrid rice Oryza sativa .

spore-forming Gram-positive motile rod-shaped aerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 405905

DSM 22170, CIP 110610

Last LPSN update 2024-12-09 10:44:23

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus hunanensis

Full scientific name Paenibacillus hunanensis Liu et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29392	positive	2.55 µm	0.85 µm	rod-shaped
119989	positive			rod-shaped

Pigmentation

29392

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16131	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water
119989	CIP Medium 29		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16131	positive	growth	28	mesophilic
29392	positive	growth	30-44
29392	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH
29392	positive	optimum	7.5
29392	positive	growth	05-10

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29392	NaCl	positive	growth	0-5 %

Spore formation

@ref	Spore formation
29392
125439

Enzymes

@ref	Value	Activity	Ec
29392	catalase	+	1.11.1.6

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29392	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29392	35581 ChEBI	indole	+

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29392	22599 ChEBI	arabinose	+	carbon source
29392	17057 ChEBI	cellobiose	+	carbon source
29392	23652 ChEBI	dextrin	+	carbon source
29392	4853 ChEBI	esculin	+	hydrolysis
29392	28757 ChEBI	fructose	+	carbon source
29392	28260 ChEBI	galactose	+	carbon source
29392	24265 ChEBI	gluconate	+	carbon source
29392	17234 ChEBI	glucose	+	carbon source
29392	17754 ChEBI	glycerol	+	carbon source
29392	28087 ChEBI	glycogen	+	carbon source
29392	17596 ChEBI	inosine	+	carbon source
29392	17716 ChEBI	lactose	+	carbon source
29392	17306 ChEBI	maltose	+	carbon source
29392	29864 ChEBI	mannitol	+	carbon source
29392	37684 ChEBI	mannose	+	carbon source
29392	28053 ChEBI	melibiose	+	carbon source
29392	506227 ChEBI	N-acetylglucosamine	+	carbon source
29392	17632 ChEBI	nitrate	+	reduction
29392	15361 ChEBI	pyruvate	+	carbon source
29392	16634 ChEBI	raffinose	+	carbon source
29392	33942 ChEBI	ribose	+	carbon source
29392	17814 ChEBI	salicin	+	carbon source
29392	30911 ChEBI	sorbitol	+	carbon source
29392	17992 ChEBI	sucrose	+	carbon source
29392	17748 ChEBI	thymidine	+	carbon source
29392	27082 ChEBI	trehalose	+	carbon source
29392	16704 ChEBI	uridine	+	carbon source
29392	18222 ChEBI	xylose	+	carbon source

Oxygen tolerance

@ref	Oxygen tolerance
29392	aerobe
125439	obligate aerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16131	seeds of hybrid rice Oryza sativa ( L.)	Oryza sativa	Hunan Province	China	CHN	Asia
119989	Seeds of hybrid rice, Oryza sativa		Hunan Province, China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU741036 (>99% sequence identity) for Paenibacillus hunanensis from Microbeatlas

Aquatic Samples	27
Soil Samples	27
Animal Samples	112
Plant Samples	352
Total Samples	518

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
16131	1	Risk group (German classification) According to TRBA 466
119989	1	Risk group (French classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
16131	53.3	thermal denaturation, midpoint method (Tm)
29392	53.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16131	Paenibacillus hunanensis strain FeL05 16S ribosomal RNA gene, partial sequence	EU741036	1514		539262

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Paenibacillus hunanensis CGMCC 1.8907	GCA_014645615	scaffold		539262
66792	Paenibacillus hunanensis strain CGMCC 1.8907	539262.4	wgs	PATRIC	539262
66792	Paenibacillus hunanensis DSM 22170	2901357172	draft	JGI IMG/M	539262

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Paenibacillus hunanensis CGMCC 1.8907
NCBI: GCA_014645615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	93.20	no
125439	motility	BacteriaNetⓘ	yes	86.90	no
125439	gram_stain	BacteriaNetⓘ	variable	80.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from Diaspora project based on:
Paenibacillus hunanensis CGMCC 1.8907
NCBI: GCA_014645615.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.49	yes
125438	anaerobic	anaerobicⓘ	no	93.67	yes
125438	aerobic	aerobicⓘ	no	57.67	no
125438	spore-forming	spore-formingⓘ	yes	83.29	yes
125438	thermophilic	thermophileⓘ	no	94.90	no
125438	flagellated	motile2+ⓘ	yes	83.89	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus bovis sp. nov., isolated from raw yak (Bos grunniens) milk.	Gao C, Han J, Liu Z, Xu X, Hang F, Wu Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000900	2016
Phylogeny	Paenibacillus wenxiniae sp. nov., a nifH gene -harbouring endophytic bacterium isolated from maize.	Gao JL, Lv FY, Wang XM, Qiu TL, Yuan M, Li JW, Zhou Y, Sun JG	Antonie Van Leeuwenhoek	10.1007/s10482-015-0554-8	2015
Phylogeny	Paenibacillus gelatinilyticus sp. nov. a psychrotolerant bacterium isolated from a reclaimed soil and amended description of Paenibacillus shenyangensis.	Padakandla SR, Lee GW, Chae JC	Antonie Van Leeuwenhoek	10.1007/s10482-015-0574-4	2015
Phylogeny	Paenibacillus kyungheensis sp. nov., isolated from flowers of magnolia.	Siddiqi MZ, Siddiqi MH, Im WT, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000521	2015
Phylogeny	Paenibacillus wulumuqiensis sp. nov. and Paenibacillus dauci sp. nov., two novel species of the genus Paenibacillus.	Zhu J, Wang W, Li SH, Song SQ, Xie YQ, Tang QY, Osman G, Shi YH, Zhang ZD, Li WJ	Arch Microbiol	10.1007/s00203-014-1077-9	2015
Phylogeny	Paenibacillus nicotianae sp. nov., isolated from a tobacco sample.	Li QQ, Zhou XK, Dang LZ, Cheng J, Hozzein WN, Liu MJ, Hu Q, Li WJ, Duan YQ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0289-y	2014
Phylogeny	Paenibacillus hordei sp. nov., isolated from naked barley in Korea.	Kim JM, Lee SH, Lee SH, Choi EJ, Jeon CO	Antonie Van Leeuwenhoek	10.1007/s10482-012-9775-2	2012
Phylogeny	Paenibacillus hunanensis sp. nov., isolated from rice seeds.	Liu Y, Liu L, Qiu F, Schumann P, Shi Y, Zou Y, Zhang X, Song W	Int J Syst Evol Microbiol	10.1099/ijs.0.012179-0	2009

Straininfo Link

@ref	Straininfo	Culture collections
80871	405905	DSM 22170, CIP 110610

Culture collection no.

Culture collection no.
DSM 22170
ACCC 10718
CGMCC 1.8907
CIP 110610
FeL05

References

#16131	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22170
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29392	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25799 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#80871	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405905.1 )
#119989	Collection of Institut Pasteur ; Curators of the CIP; CIP 110610
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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