Cite this strain

Pseudoalteromonas translucida (DSM 14402, ATCC BAA-315, KMM 520)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12691

Type strain

Culture col. no. DSM 14402 ATCC BAA-315 KMM 520 LMG 19696 CIP 107731

NCBI tax ID(s) 1315283 166935

Special Collections DSMZ CIP

Links

Name and taxonomic classification

Pseudoalteromonas translucida DSM 14402 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water.

Gram-negative rod-shaped obligate aerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 377531

LMG 19694, ATCC BAA-315, DSM 14402, CIP 107731

Last LPSN update 2024-12-09 10:44:30

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Pseudoalteromonadaceae

Genus Pseudoalteromonas

Species Pseudoalteromonas translucida

Full scientific name Pseudoalteromonas translucida Ivanova et al. 2002

BacDive ID	Other strains from **Pseudoalteromonas translucida** (1)	Type strain
137573	P. translucida CIP 108707, TAC 125

Morphology

Cell morphology

@ref	Gram stain	Cell shape
123574	negative	rod-shaped
125438	negative
125439	negative

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5339	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42044	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
123574	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5339	positive	growth	28	mesophilic
42044	positive	growth	25	mesophilic
123574	positive	growth	5-30
123574	negative	growth	37
123574	negative	growth	41

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123574	NaCl	positive	growth	2-8 %
123574	NaCl		growth	0 %
123574	NaCl		growth	10 %

Spore formation

@ref	Spore formation	Confidence
125439		94.5

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123574	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123574	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
123574	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123574	caseinase	+	3.4.21.50
123574	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123574	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123574	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123574	ornithine decarboxylase	-	4.1.1.17
123574	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
123574	tryptophan deaminase	-
123574	tween esterase	+
123574	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123574	35581 ChEBI	indole

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123574	4853 ChEBI	esculin	-	hydrolysis
123574	17632 ChEBI	nitrate	-	reduction
123574	17632 ChEBI	nitrate	-	respiration
123574	16301 ChEBI	nitrite	-	reduction

Oxygen tolerance

123574

Oxygen toleranceobligate aerobe

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123574	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123574	not determinedn.d.	+	-	+	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5339	sea water	Sea of Japan	Russia	RUS	Asia
123574	Environment, Seawater		Japan	JPN	Asia

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
5339	1	Risk group (German classification) According to TRBA 466
123574	1	Risk group (French classification) According to TRBA 466

Sequence information

GC content

5339

GC-content (mol%)46.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5339	Pseudoalteromonas sp. KMM 520 16S ribosomal RNA gene, partial sequence	AY040230	1500		1315283
124043	Pseudoalteromonas translucida KMM 520 16S ribosomal RNA gene, partial sequence.	OR335276	958		1315283

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Pseudoalteromonas translucida KMM 520	GCA_001465295	complete		1315283
66792	Pseudoalteromonas translucida KMM 520	1315283.4	complete	PATRIC	1315283
66792	Pseudoalteromonas translucida KMM 520	2654587552	complete	JGI IMG/M	1315283

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Pseudoalteromonas translucida KMM 520
NCBI: GCA_001465295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.50	no
125439	motility	BacteriaNetⓘ	no	54.00	no
125439	gram_stain	BacteriaNetⓘ	negative	91.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.60	no

Predictions from Diaspora project based on:
Pseudoalteromonas translucida KMM 520 KMM 520
NCBI: GCA_001465295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.72	no
125438	aerobic	aerobicⓘ	yes	73.95	yes
125438	spore-forming	spore-formingⓘ	no	88.59	no
125438	thermophilic	thermophileⓘ	no	99.00	no
125438	flagellated	motile2+ⓘ	yes	86.43	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Orthogonal CRISPR-associated transposases for parallel and multiplexed chromosomal integration.	Yang S, Zhang Y, Xu J, Zhang J, Zhang J, Yang J, Jiang Y, Yang S	Nucleic Acids Res	10.1093/nar/gkab752	2021
Genetics	Complete genome sequence of a marine bacterium with two chromosomes, Pseudoalteromonas translucida KMM 520(T).	Rong JC, Liu M, Li Y, Sun TY, Pang XH, Qin QL, Chen XL, Xie BB	Mar Genomics	10.1016/j.margen.2016.01.007	2016
Phylogeny	Pseudoalteromonas translucida sp. nov. and Pseudoalteromonas paragorgicola sp. nov., and emended description of the genus.	Ivanova EP, Sawabe T, Lysenko AM, Gorshkova NM, Hayashi K, Zhukova NV, Nicolau DV, Christen R, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1759	2002

Straininfo Link

@ref	Straininfo	Culture collections
81903	377531	LMG 19694, ATCC BAA-315, DSM 14402, CIP 107731

Culture collection no.

Culture collection no.
DSM 14402
ATCC BAA-315
KMM 520
LMG 19696
CIP 107731

References

#5339	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14402
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42044	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#81903	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377531.1 )
#123574	Collection of Institut Pasteur ; Curators of the CIP; CIP 107731
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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