Cite this strain

Marinobacter salarius (DSM 27081, CIP 110588, JCM 19399)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130155

Type strain

Strain Designation R9sw1

Culture col. no. DSM 27081 CIP 110588 JCM 19399 KMM 7502 LMG 27497 1 more

NCBI tax ID(s) 1420917

Special Collections DSMZ JCM CIP

Links

Name and taxonomic classification

Marinobacter salarius R9sw1 is a mesophilic, Gram-negative, motile bacterium that was isolated from sea water.

Gram-negative motile rod-shaped mesophilic genome sequence 16S sequence Bacteria

SI-ID 399192

DSM 27081, CIP 110588

Last LPSN update 2024-12-09 10:48:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter salarius

Full scientific name Marinobacter salarius Ng et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98
125439	negative	96.3
122360	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22044	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
122360	CIP Medium 13		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22044	positive	growth	25	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22044	sea water	Pacific Ocean, Sea of Japan, Chazhma Bay (42°53'38'' N 132°22'02'' E)	Russia	RUS	Asia	42.8939	132.367 42.8939/132.367
67770	Seawater from a radioactive contaminated area in Chazhma Bay	Gulf of Peter the Great	Russia	RUS
122360	Environment, Seawater	Chazma Bay	Sea of Japan

Taxonmaps

69479

Global distribution of 16S sequence KJ547705 (>99% sequence identity) for Marinobacter from Microbeatlas

Aquatic Samples	358
Soil Samples	8
Animal Samples	54
Plant Samples	4
Total Samples	424

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
22044	1	Risk group (German classification)
122360	1	Risk group (French classification)

Sequence information

GC content

@ref	GC-content (mol%)	Method
22044	57.1	sequence analysis

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22044	Marinobacter salarius strain R9SW1 16S ribosomal RNA gene, partial sequence	KJ547705	1531		1420917

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Marinobacter salarius R9SW1	GCA_000831005	complete		1420917
66792	Marinobacter salarius R9SW1	1420917.4	complete	PATRIC	1420917
66792	Marinobacter salarius R9SW1	2687453324	complete	JGI IMG/M	1420917

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Marinobacter salarius R9SW1
PATRIC: 1420917.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.40	no
125439	motility	BacteriaNetⓘ	yes	78.00	no
125439	gram_stain	BacteriaNetⓘ	negative	96.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	85.60	no

Predictions from Diaspora project based on:
Marinobacter salarius R9SW1
NCBI: GCA_000831005.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	97.44	no
125438	aerobic	aerobicⓘ	yes	87.10	no
125438	spore-forming	spore-formingⓘ	no	89.79	no
125438	thermophilic	thermophileⓘ	no	96.44	yes
125438	flagellated	motile2+ⓘ	yes	85.70	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water.	Ng HJ, Lopez-Perez M, Webb HK, Gomez D, Sawabe T, Ryan J, Vyssotski M, Bizet C, Malherbe F, Mikhailov VV, Crawford RJ, Ivanova EP	PLoS One	10.1371/journal.pone.0106514	2014

Straininfo Link

@ref	Straininfo	Culture collections
88708	399192	DSM 27081, CIP 110588

Culture collection no.

Culture collection no.
DSM 27081
CIP 110588
JCM 19399
KMM 7502
LMG 27497
R9sw1

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22044	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27081
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#88708	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399192.1 )
#122360	Collection of Institut Pasteur ; Curators of the CIP; CIP 110588
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

Rate our new design

Content

About us