Cite this strain

Planobispora takensis (DSM 46863, BCC 48396, NBRC 109077)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130732

Type strain

Strain Designation A-T 7458

Culture col. no. DSM 46863 BCC 48396 NBRC 109077 A-T 7458

NCBI tax ID(s) 1367882

Special Collections DSMZ

Links

Name and taxonomic classification

Planobispora takensis A-T 7458 is a spore-forming, mesophilic bacterium that was isolated from soil collected from hill evergreen forest.

spore-forming mesophilic genome sequence 16S sequence Bacteria

SI-ID 404584

DSM 46863

Last LPSN update 2024-12-09 10:48:58

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Planobispora

Species Planobispora takensis

Full scientific name Planobispora takensis Ngaemthao et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.4

Multimedia

@ref:	21729
manual_annotation:	1
multimedia content:	DSM_46863.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46863.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
21729	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe provided by DSMZ
21729	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21729	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21729	soil collected from hill evergreen forest	Tak province	Thailand	THA	Asia

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
21729	1	Risk group (German classification)

Sequence information

GC content

21729

GC-content (mol%)72.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21729	Enterovirus A71 isolate JB143090173 capsid protein VP1 gene, partial cds	KC866732	891		39054

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Planobispora takensis NBRC 109077	GCA_016863195	contig		1367882
66792	Planobispora takensis strain NBRC 109077	1367882.3	wgs	PATRIC	1367882

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Planobispora takensis NBRC 109077
NCBI: GCA_016863195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	69.90	no
125439	motility	BacteriaNetⓘ	no	80.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Predictions from Diaspora project based on:
Planobispora takensis strain NBRC 109077
PATRIC: 1367882.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.14	no
125438	anaerobic	anaerobicⓘ	no	92.79	no
125438	spore-forming	spore-formingⓘ	yes	82.46	no
125438	aerobic	aerobicⓘ	yes	85.48	no
125438	thermophilic	thermophileⓘ	no	95.88	yes
125438	flagellated	motile2+ⓘ	no	57.83	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planobispora takensis sp. nov., isolated from soil.	Ngaemthao W, Suriyachadkun C, Chunhametha S, Niemhom N, Thawai C, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.057968-0	2014

Straininfo Link

@ref	Straininfo	Culture collections
89235	404584	DSM 46863

Culture collection no.

Culture collection no.
DSM 46863
BCC 48396
NBRC 109077
A-T 7458

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21729	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46863
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#89235	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404584.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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