Cite this strain

Shouchella xiaoxiensis (DSM 21943, CCTCC AA 208057, JSM 081004)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1312

Type strain

Culture col. no. DSM 21943 CCTCC AA 208057 JSM 081004

NCBI tax ID(s) 766895

Special Collections DSMZ

Links

Name and taxonomic classification

Shouchella xiaoxiensis DSM 21943 is a spore-forming, mesophilic bacterium that was isolated from forest soil.

spore-forming mesophilic genome sequence 16S sequence Bacteria

SI-ID 399507

DSM 21943

Last LPSN update 2024-12-09 10:43:17

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Shouchella

Species Shouchella xiaoxiensis

Full scientific name Shouchella xiaoxiensis (Chen et al. 2011) Joshi et al. 2022

Synonyms (2)

Bacillus xiaoxiensis
Alkalihalobacillus xiaoxiensis

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16060	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16060	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		94.39

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16060	forest soil	Hunan Province, Xiaoxi National Natural Reserve	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM054474 (>99% sequence identity) for Alkalihalobacillus from Microbeatlas

Aquatic Samples	120
Soil Samples	196
Animal Samples	384
Plant Samples	68
Total Samples	768

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
16060	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
16060	40.1	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16060	Bacillus xiaoxiensis strain JSM 081004 16S ribosomal RNA gene, partial sequence	HM054474	1467		766895

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Shouchella xiaoxiensis DSM 21943	GCA_016907895	contig		766895
66792	Alkalihalobacillus xiaoxiensis strain DSM 21943	766895.3	wgs	PATRIC	766895
66792	Alkalihalobacillus xiaoxiensis DSM 21943	2898005585	draft	JGI IMG/M	766895

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Shouchella xiaoxiensis DSM 21943
NCBI: GCA_016907895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.30	no
125439	motility	BacteriaNetⓘ	yes	87.20	no
125439	gram_stain	BacteriaNetⓘ	variable	76.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from Diaspora project based on:
Alkalihalobacillus xiaoxiensis strain DSM 21943
PATRIC: 766895.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.59	no
125438	anaerobic	anaerobicⓘ	no	96.99	no
125438	aerobic	aerobicⓘ	yes	81.30	no
125438	spore-forming	spore-formingⓘ	yes	94.39	no
125438	thermophilic	thermophileⓘ	no	93.12	yes
125438	flagellated	motile2+ⓘ	yes	81.44	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus shacheensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.	Lei Z, Qiu P, Ye R, Tian J, Liu Y, Wang L, Tang SK, Li WJ, Tian Y	J Gen Appl Microbiol	DN/JST.JSTAGE/jgam/60.101	2014
Phylogeny	Bacillus xiaoxiensis sp. nov., a slightly halophilic bacterium isolated from non-saline forest soil.	Chen YG, Zhang YQ, Chen QH, Klenk HP, He JW, Tang SK, Cui XL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.026286-0	2010

Straininfo Link

@ref	Straininfo	Culture collections
70963	399507	DSM 21943

Culture collection no.

Culture collection no.
DSM 21943
CCTCC AA 208057
JSM 081004

References

#16060	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21943
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#70963	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399507.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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