Cite this strain

Sulfitobacter noctilucae (DSM 100978, JCM 18833, KCTC 32122)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131302

Type strain

Strain Designation NB-68

Culture col. no. DSM 100978 JCM 18833 KCTC 32122 NB-68

NCBI tax ID(s) 1342302

Special Collections DSMZ JCM KCTC

Links

Name and taxonomic classification

Sulfitobacter noctilucae NB-68 is a mesophilic bacterium that was isolated from coastel water of sea sparkle bloom.

mesophilic genome sequence 16S sequence Bacteria

SI-ID 403750

DSM 100978

Last LPSN update 2024-12-09 10:49:02

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Sulfitobacter

Species Sulfitobacter noctilucae

Full scientific name Sulfitobacter noctilucae Kwak et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.3

Colony morphology

22529

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22529	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22529	positive	growth	25	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.5

Enzymes

@ref	Value	Activity	Ec
22529	catalase	+	1.11.1.6
22529	cytochrome-c oxidase	+	1.9.3.1

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Microbial	#Zooplankton

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22529	coastel water of sea sparkle bloom	Geoje Island	Republic of Korea	KOR	Asia	34.875	128.625 34.875/128.625
67770	Seawater of a region of sea sparkle bloom in Geoje island		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC428716 (>99% sequence identity) for Sulfitobacter noctilucae from Microbeatlas

Aquatic Samples	40
Soil Samples	6
Animal Samples
Plant Samples
Total Samples	46

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
22529	1	Risk group (German classification)

Sequence information

GC content

@ref	GC-content (mol%)
22529	58.33
67770	58.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22529	Sulfitobacter noctilucae strain NB-68 16S ribosomal RNA gene, partial sequence	KC428716	1409		1342302

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Sulfitobacter noctilucae NB-68	2579778790	draft	JGI IMG/M	1342302
67770	Sulfitobacter noctilucae NB-68	GCA_000622365	contig		1342302

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Sulfitobacter noctilucae NB-68
NCBI: GCA_000622365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	yes	62.90	no
125439	gram_stain	BacteriaNetⓘ	negative	96.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.40	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfitobacter pacificus sp. nov., isolated from the red alga Pyropia yezoensis.	Fukui Y, Abe M, Kobayashi M, Satomi M	Antonie Van Leeuwenhoek	10.1007/s10482-015-0407-5	2015
Phylogeny	Sulfitobacter geojensis sp. nov., Sulfitobacter noctilucae sp. nov., and Sulfitobacter noctilucicola sp. nov., isolated from coastal seawater.	Kwak MJ, Lee JS, Lee KC, Kim KK, Eom MK, Kim BK, Kim JF	Int J Syst Evol Microbiol	10.1099/ijs.0.065961-0	2014
Phylogeny	Sulfitobacter alexandrii sp. nov., a new microalgae growth-promoting bacterium with exopolysaccharides bioflocculanting potential isolated from marine phycosphere.	Yang Q, Ge YM, Iqbal NM, Yang X, Zhang XL	Antonie Van Leeuwenhoek	10.1007/s10482-021-01580-0	2021

Straininfo Link

@ref	Straininfo	Culture collections
89744	403750	DSM 100978

Culture collection no.

Culture collection no.
DSM 100978
JCM 18833
KCTC 32122
NB-68

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22529	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100978
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#89744	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403750.1 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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