Cite this strain

(DSM 102431, Root187)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132081

Type strain

Strain Designation Root187

Culture col. no. DSM 102431 Root187

NCBI tax ID(s) 1871188

Special Collections DSMZ Arabidopsis

Links

Name and taxonomic classification

Root187 is an aerobe, spore-forming, mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

spore-forming aerobe mesophilic genome sequence Bacteria

SI-ID 404611

DSM 102431

Last LPSN update 2024-12-09 10:49:07

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Kitasatospora

Full scientific name Kitasatospora corrig. ?mura et al. 1983

Synonyms (1)

Kitasatosporia

Morphology

Cell morphology

@ref	Motility	Confidence
125438		92.5
125438		90.109
125439		99.9
125439		92.5

Multimedia

@ref:	23872
manual_annotation:	1
multimedia content:	DSM_102431.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_102431.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23872	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
23872	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe provided by DSMZ

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23872	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.336
125439		95.4

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.417
125439	aerobe	98.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23872	roots of Arabidopsis thaliana ecotype Shakdara (Sha)	Arabidopsis thaliana	Cologne (50.958N 6.856E)	Germany	DEU	Europe	50.958	6.856 50.958/6.856

Safety information

Sequence information

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Kitasatospora sp. Root187	GCA_001429805	scaffold		1736486
66792	Kitasatospora sp. Root187	1736486.3	wgs	PATRIC	1736486
66792	Kitasatospora sp. Root187	2643221601	draft	JGI IMG/M	1736486

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Kitasatospora sp. Root187
NCBI: GCA_001429805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.40	no
125439	motility	BacteriaNetⓘ	no	92.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	98.40	no

Predictions from Diaspora project based on:
Kitasatospora sp. Root187 Root187
NCBI: GCA_001429805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.11	no
125438	anaerobic	anaerobicⓘ	no	96.42	no
125438	aerobic	aerobicⓘ	yes	91.42	no
125438	spore-forming	spore-formingⓘ	yes	90.34	no
125438	thermophilic	thermophileⓘ	no	95.42	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
90438	404611	DSM 102431

Culture collection no.

Culture collection no.
DSM 102431
Root187

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23872	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102431
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#90438	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404611.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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