Cite this strain

Paraburkholderia metalliresistens (DSM 26823, CICC 10561, D414)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132990

Type strain

Strain Designation D414

Culture col. no. DSM 26823 CICC 10561 D414

NCBI tax ID(s) 1398664

Special Collections DSMZ

Links

Name and taxonomic classification

Paraburkholderia metalliresistens D414 is a mesophilic bacterium that was isolated from arable layer of a heavy metal-polluted paddy soil, mine.

mesophilic 16S sequence Bacteria

SI-ID 403410

DSM 26823

Last LPSN update 2024-12-09 10:49:13

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Paraburkholderia

Species Paraburkholderia metalliresistens

Full scientific name Paraburkholderia metalliresistens (Guo et al. 2015) Dobritsa and Samadpour 2016

Synonyms (1)

Burkholderia metalliresistens

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24778	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24778	positive	growth	30	mesophilic

Physiology and metabolism

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
24778	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	+	+/-	+	+	+	+
24778	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	+	+/-	+	+	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Engineered	#Contamination	#Heavy metal
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24778	arable layer (0–20 cm) of a heavy metal-polluted paddy soil, mine	Guangdong Province, Dabao Mountain Mine	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KF601211 (>99% sequence identity) for Paraburkholderia from Microbeatlas

Aquatic Samples	45
Soil Samples	513
Animal Samples	195
Plant Samples	142
Total Samples	895

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
24778	1	Risk group (German classification)

Sequence information

GC content

@ref	GC-content (mol%)	Method
24778	62.3	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24778	Paraburkholderia metalliresistens strain D414 16S ribosomal RNA gene, partial sequence	KF601211	1437		1398664

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia metalliresistens sp. nov., a multiple metal-resistant and phosphate-solubilising species isolated from heavy metal-polluted soil in Southeast China.	Guo JK, Ding YZ, Feng RW, Wang RG, Xu YM, Chen C, Wei XL, Chen WM	Antonie Van Leeuwenhoek	10.1007/s10482-015-0453-z	2015

Straininfo Link

@ref	Straininfo	Culture collections
91266	403410	DSM 26823

Culture collection no.

Culture collection no.
DSM 26823
CICC 10561
D414

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24778	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26823
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#91266	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403410.1 )

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