Cite this strain

Skermanella rosea (M1, KEMB 2255-458, JCM 31276)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133168

Type strain

Strain Designation M1

Culture col. no. M1 KEMB 2255-458 JCM 31276

NCBI tax ID(s) 1817965

Special Collections JCM Literature strains

Links

Name and taxonomic classification

Skermanella rosea M1 is a chemoorganoheterotroph, Gram-negative, motile bacterium that was isolated from hydrocarbon-contaminated desert sands.

Gram-negative motile rod-shaped chemoorganoheterotroph 16S sequence Bacteria

Culture Collection Numbers

M1 KEMB 2255-458 JCM 31276

Last LPSN update 2024-12-09 10:49:14

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Azospirillaceae

Genus Skermanella

Species Skermanella rosea

Full scientific name Skermanella rosea Subhash and Lee 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
24943	negative	1.4-1.5 µm	0.8-0.9 µm	rod-shaped		polar

Colony morphology

24943

Colony colordark pink

Pigmentation

@ref	Production	Name
24943		Carotenoid pigments

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
24943	positive	growth	12-45
24943	positive	optimum	27-32
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
24943	positive	optimum	6.1-8.8	alkaliphile
24943	positive	growth	6.5-7.5

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
24943	NaCl	positive	growth	0-4.5 %
24943	NaCl	positive	optimum	0-0.5 %
24943	NaCl	positive	maximum	4.5 %

Enzymes

@ref	Value	Activity	Ec
24943	acid phosphatase	+	3.1.3.2
24943	alkaline phosphatase	+	3.1.3.1
24943	alpha-chymotrypsin	-	3.4.21.1
24943	alpha-fucosidase	-	3.2.1.51
24943	alpha-galactosidase	-	3.2.1.22
24943	alpha-glucosidase	+	3.2.1.20
24943	alpha-mannosidase	-	3.2.1.24
24943	arginine dihydrolase	-	3.5.3.6
24943	beta-galactosidase	-	3.2.1.23
24943	beta-glucosidase	-	3.2.1.21
24943	beta-glucuronidase	-	3.2.1.31
24943	catalase	+	1.11.1.6
24943	cystine arylamidase	-	3.4.11.3
24943	cytochrome oxidase	+	1.9.3.1
24943	esterase (C 4)	+
24943	esterase lipase (C 8)	+
24943	leucine arylamidase	+	3.4.11.1
24943	lipase (C 14)	-
24943	N-acetyl-beta-glucosaminidase	-	3.2.1.52
24943	naphthol-AS-BI-phosphohydrolase	+
24943	trypsin	-	3.4.21.4
24943	tryptophan deaminase	-	4.1.99.1
24943	valine arylamidase	-

Antibiotic resistance

@ref	ChEBI	Metabolite
24943	28971	ampicillin
24943	17698	chloramphenicol
24943	100147	nalidixic acid
24943	18208	penicillin g
24943	28077	rifampicin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
24943	15688 ChEBI	acetoin
24943	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
24943	15688 ChEBI	acetoin	-
24943	17234 ChEBI	glucose
24943	35581 ChEBI	indole

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24943	35391 ChEBI	aspartate	+	carbon source
24943	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
24943		casein	+	hydrolysis
24943	17057 ChEBI	cellobiose	-	carbon source
24943	17057 ChEBI	cellobiose	-	builds acid from
24943	17029 ChEBI	chitin	-	hydrolysis
24943	15824 ChEBI	D-fructose	+	carbon source
24943	15824 ChEBI	D-fructose	+	builds acid from
24943	12936 ChEBI	D-galactose	+	carbon source
24943	12936 ChEBI	D-galactose	+	builds acid from
24943	17634 ChEBI	D-glucose	+	carbon source
24943	17634 ChEBI	D-glucose	+	builds acid from
24943	16899 ChEBI	D-mannitol	+	carbon source
24943	17924 ChEBI	D-sorbitol	+	carbon source
24943	16991 ChEBI	dna	-	hydrolysis
24943	5291 ChEBI	gelatin	-	hydrolysis
24943	17234 ChEBI	glucose	-	fermentation
24943	29987 ChEBI	glutamate	-	carbon source
24943	30849 ChEBI	L-arabinose	+	carbon source
24943	30849 ChEBI	L-arabinose	+	builds acid from
24943	62345 ChEBI	L-rhamnose	-	carbon source
24943	17716 ChEBI	lactose	-	carbon source
24943	17306 ChEBI	maltose	-	carbon source
24943	17306 ChEBI	maltose	-	builds acid from
24943	17632 ChEBI	nitrate	-	reduction
24943	15361 ChEBI	pyruvate	+	carbon source
24943	16634 ChEBI	raffinose	-	carbon source
24943	16634 ChEBI	raffinose	-	builds acid from
24943	28017 ChEBI	starch	-	hydrolysis
24943	17992 ChEBI	sucrose	+	carbon source
24943	17992 ChEBI	sucrose	+	builds acid from
24943	27897 ChEBI	tryptophan	-	energy source
24943	53424 ChEBI	tween 20	+	hydrolysis
24943	53426 ChEBI	tween 80	+	hydrolysis
24943	18186 ChEBI	tyrosine	+	hydrolysis
24943	16199 ChEBI	urea	-	hydrolysis

Nutrition type

24943

Typechemoorganoheterotroph

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Contamination
#Environmental	#Terrestrial
#Environmental	#Terrestrial

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
24943	hydrocarbon-contaminated desert sands	Kuwait	KWT	Asia
67770	Hydrocarbon-contaminated desert sands	Kuwait	KWT	Asia

Taxonmaps

69479

Global distribution of 16S sequence LT545982 (>99% sequence identity) for Skermanella from Microbeatlas

Aquatic Samples	3
Soil Samples	14
Animal Samples	13
Plant Samples
Total Samples	30

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
24943	69.5	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24943	Skermanella sp. M1 partial 16S rRNA gene, strain M1	LT545982	1416		1817965

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Skermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands.	Subhash Y, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001293	2016

Culture collection no.

Culture collection no.
M1
KEMB 2255-458
JCM 31276

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24943	Y. L. Subhash, Sang-Seob: Skermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands. IJSEM 66: 3951 - 3956 2016 ( DOI 10.1099/ijsem.0.001293 , PubMed 27406793 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

Rate our new design

Content

About us