Cite the latest
BacDive paper
×

Rate our new design

Thank you!
BacDive D3 OLD DESIGN
Content
Advanced search Isolation sources API ® test finder TAXplorer Statistics Special collections Download selection Web services SPARQL
About us
About Team Contact Tutorials News Mailinglist
Cite this strain Archive
Bacterial strain

Alcanivorax hongdengensis (CGMCC 1.7084, LMG 24624, MCCC 1A01496)

BacDive ID 133431
Type strain
Strain Designation A-11-3
Culture col. no. CGMCC 1.7084 LMG 24624 MCCC 1A01496 A-11-3
NCBI tax ID(s) 519051
Special Collections Literature strains
Links

Morphology

Cell morphology

@refGram stainCell lengthCell widthCell shapeMotility
28920negative2.05 µm0.65 µmrod-shaped
125438negative
125439negative
125439

Pigmentation

28920Productionno

Culture and growth conditions

Culture temp

@refGrowthTypeTemperature (°C)
28920positivegrowth10-42
28920positiveoptimum26.5

Culture pH

@refAbilityTypePH
28920positiveoptimum7.5
28920positivegrowth4.0-10.0

Physiology and metabolism

Halophily

@refSaltGrowthTested relationConcentration
28920NaClpositivegrowth0.5-15 %
28920NaClpositiveoptimum5.5 %

Spore formation

@refSpore formation
28920
125438
125439

Enzymes

@refValueActivity
28920gelatinase+

Metabolite utilization

@refChebi-IDMetaboliteUtilization activityKind of utilization tested
2892037054 ChEBI3-hydroxybutyrate+carbon source
2892030089 ChEBIacetate+carbon source
2892051850 ChEBImethyl pyruvate+carbon source
2892017632 ChEBInitrate+reduction
2892017272 ChEBIpropionate+carbon source
2892030031 ChEBIsuccinate+carbon source
2892053423 ChEBItween 40+carbon source
2892053426 ChEBItween 80+carbon source

Oxygen tolerance

28920Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine

Isolation

28920Sample typeseawater

Safety information

Sequence information

GC content

28920GC-content (mol%)54.7

16S sequences

@refDescriptionAccessionLengthDatabaseNCBI tax ID
28920Alcanivorax hongdengensis strain A-11-3 16S ribosomal RNA gene, partial sequenceEU4389011504


1177179  

Genome sequences

@refDescriptionAccessionAssembly levelDatabaseNCBI tax ID
66792Alcanivorax hongdengensis A-11-3GCA_000300995contig

1177179  
66792Alcanivorax hongdengensis A-11-31177179.3wgs
PATRIC
1177179  
66792Alcanivorax hongdengensis A-11-32531839231draft
JGI IMG/M
1177179  

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Alcanivorax hongdengensis A-11-3
 NCBI: GCA_000300995
@ref Trait Model Prediction Confidence in % In training data
125439 spore_formation BacteriaNetⓘ no 99.90 no
125439 motility BacteriaNetⓘ yes 93.60 no
125439 gram_stain BacteriaNetⓘ negative 99.90 no
125439 oxygen_tolerance BacteriaNetⓘ obligate aerobe 63.70 no
Predictions from Diaspora project based on:
Alcanivorax hongdengensis A-11-3
 PATRIC: 1177179.3
@ref Trait Model Prediction Confidence in % In training data
125438 gram-positive gram-positiveⓘ no 96.47 yes
125438 anaerobic anaerobicⓘ no 95.10 yes
125438 spore-forming spore-formingⓘ no 94.79 yes
125438 aerobic aerobicⓘ yes 76.88 no
125438 thermophilic thermophileⓘ no 97.21 yes
125438 flagellated motile2+ⓘ yes 56.64 no

External links

Literature

TopicTitleAuthorsJournalDOIYear
MetabolismGenes involved in alkane degradation in the Alcanivorax hongdengensis strain A-11-3.Wang W, Shao ZAppl Microbiol Biotechnol10.1007/s00253-011-3818-x2011
Metabolism[Identification of almA genes involved in long-chain alkane degradation by Alcanivorax hongdengensis A-11-3].Wang W, Shao ZWei Sheng Wu Xue Bao2010
GeneticsGenome sequence of the alkane-degrading bacterium Alcanivorax hongdengensis type strain A-11-3.Lai Q, Shao ZJ Bacteriol10.1128/JB.01849-122012
PhylogenyAlcanivorax nanhaiticus sp. nov., isolated from deep sea sediment.Lai Q, Zhou Z, Li G, Li G, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0012472016
PhylogenyAlcanivorax hongdengensis sp. nov., an alkane-degrading bacterium isolated from surface seawater of the straits of Malacca and Singapore, producing a lipopeptide as its biosurfactant.Wu Y, Lai Q, Zhou Z, Qiao N, Liu C, Shao ZInt J Syst Evol Microbiol10.1099/ijs.0.001552-02009
@refStraininfoCulture collections
91436354038LMG 24624, CGMCC 1.7084

Culture collection no.

Culture collection no.
CGMCC 1.7084
LMG 24624
MCCC 1A01496
A-11-3

References

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28920 Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25359 (see below)
#66792 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#91436 Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID354038.1 )
#125438 Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439 Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

BacDive

About Team News Mailinglist

Help

How to cite Tutorials Contact Help

Social Media

BlueskyBluesky linkedin de.NBI Survey
DSMZ Global core biodata resource deNBI Elixis core data resource DZIF NFDI4 Biodiversity NFDI4 Microbiota
© DSMZ 2025 Imprint Privacy Statement Copyright & License License