Cite this strain

Acidocella aluminiidurans (NBRC 104303, DSM 108313, VTCC D9-1)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133532

Type strain

Strain Designation AL46, VTCC-D9-1

Culture col. no. NBRC 104303 DSM 108313 VTCC D9-1 AL46 VTCC-D9-1

NCBI tax ID(s) 472056

Special Collections DSMZ Literature strains

Links

Name and taxonomic classification

Acidocella aluminiidurans AL46 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Waterweed from highly acidic swamp.

Gram-negative rod-shaped aerobe mesophilic 16S sequence Bacteria

SI-ID 404595

DSM 108313

Last LPSN update 2024-12-09 10:49:16

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acidocella

Species Acidocella aluminiidurans

Full scientific name Acidocella aluminiidurans Kimoto et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29361	negative	1.4 µm	0.3 µm	rod-shaped

Pigmentation

29361

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64731	ACIDIPHILIUM MEDIUM (DSMZ Medium 269)		Medium recipe at MediaDive	Name: ACIDIPHILIUM MEDIUM (DSMZ Medium 269; with strain-specific modifications) Composition: (NH4)2SO4 2.0 g/l D-Glucose 1.0 g/l Trypticase soy broth 1.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Yeast extract 0.3 g/l KCl 0.1 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
29361	positive	growth	17-42
64731	positive	growth	28

Culture pH

@ref	Ability	Type	PH
29361	positive	optimum	4.5
29361	positive	growth	03-07

Physiology and metabolism

Spore formation

29361

Spore formationno

Enzymes

@ref	Value	Activity
29361	gelatinase	+

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29361	16449 ChEBI	alanine	+	carbon source
29361	23652 ChEBI	dextrin	+	carbon source
29361	29987 ChEBI	glutamate	+	carbon source
29361	28087 ChEBI	glycogen	+	carbon source
29361	30031 ChEBI	succinate	+	carbon source
29361	27248 ChEBI	urocanic acid	+	carbon source

Oxygen tolerance

29361

Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Aquatic plant

Isolation

@ref	Sample type
29361	Waterweed from highly acidic swamp
64731	Torpedo grass, Panicum repens

Taxonmaps

69479

Global distribution of 16S sequence AB362219 (>99% sequence identity) for Acidocella from Microbeatlas

Aquatic Samples	558
Soil Samples	285
Animal Samples	371
Plant Samples	227
Total Samples	1441

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
64731	1	Risk group (German classification)

Sequence information

GC content

64731

GC-content (mol%)65.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29361	Acidocella aluminiidurans gene for 16S rRNA, partial sequence	AB362219	1474		472056
64731	Acidocella aluminiidurans gene for 16S rRNA, partial sequence, strain: NBRC 104303	AB682174	1410		472056

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidocella aluminiidurans sp. nov., an aluminium-tolerant bacterium isolated from Panicum repens grown in a highly acidic swamp in actual acid sulfate soil area of Vietnam.	Kimoto KI, Aizawa T, Urai M, Bao Ve N, Suzuki KI, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.011569-0	2009

Straininfo Link

@ref	Straininfo	Culture collections
91490	404595	DSM 108313

Culture collection no.

Culture collection no.
NBRC 104303
DSM 108313
VTCC D9-1
AL46
VTCC-D9-1

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29361	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25772 (see below)
#64731	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108313
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#91490	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404595.1 )

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Acidocella aluminiidurans (NBRC 104303, DSM 108313, VTCC D9-1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Enzymes

Metabolite utilization

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Safety information

Risk assessment

Sequence information

GC content

16S sequences

Genome-based predictions

External links

Literature

Straininfo Link

Culture collection no.

References

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