Mycoplasma amphoriforme A39 is a facultative anaerobe, mesophilic bacterium that was isolated from human - mouth.
facultative anaerobe mesophilic genome sequence 16S sequence Bacteria|
|
| Domain Bacteria |
| Phylum Mycoplasmatota |
| Class Mollicutes |
| Order Mycoplasmatales |
| Family Mycoplasmataceae |
| Genus Mycoplasma |
| Species Mycoplasma amphoriforme |
| Full scientific name Mycoplasma amphoriforme Pitcher et al. 2005 |
| Synonyms (1) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 31307 | positive | optimum | 37 | mesophilic |
| 31307 | Sample typehuman - mouth |
Global distribution of 16S sequence AY531655 (>99% sequence identity) for Mycoplasma amphoriforme subclade from Microbeatlas ![]()
| 31307 | GC-content (mol%)34 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 31307 | Mycoplasma amphoriforme strain A39 16S ribosomal RNA gene, partial sequence | AY531655 | 1511 | 572419 | ||
| 124043 | Mycoplasma amphoriforme strain A39 16S ribosomal RNA gene, partial sequence. | HM235423 | 1504 | 572419 | ||
| 124043 | Mycoplasma amphoriforme A39 16S-23S ribosomal RNA intergenic spacer, partial sequence. | HM235424 | 367 | 572419 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.10 | no |
| 125439 | motility | BacteriaNetⓘ | no | 65.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 66.64 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 76.79 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 94.90 | no |
| 125438 | aerobic | aerobicⓘ | no | 88.45 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 96.53 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 94.54 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Mycoplasma amphoriforme sp. nov., isolated from a patient with chronic bronchopneumonia. | Pitcher DG, Windsor D, Windsor H, Bradbury JM, Yavari C, Jensen JS, Ling C, Webster D | Int J Syst Evol Microbiol | 10.1099/ijs.0.63269-0 | 2005 |
| Culture collection no. | |
|---|---|
| NCTC 11740 | |
| ATCC BAA-992 | |
| A39 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #31307 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27622 (see below) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
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