Cite this strain

Marinobacter psychrophilus (CGMCC 1.6499, JCM 14643, 20041)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134346

Type strain

Strain Designation 20041

Culture col. no. CGMCC 1.6499 JCM 14643 20041 BCRC 80070

NCBI tax ID(s) 330734

Special Collections JCM Literature strains

Links

Name and taxonomic classification

Marinobacter psychrophilus 20041 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative motile rod-shaped aerobe psychrophilic genome sequence 16S sequence Bacteria

Culture Collection Numbers

CGMCC 1.6499 JCM 14643 20041 BCRC 80070

Last LPSN update 2024-12-09 10:49:21

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacter

Species Marinobacter psychrophilus

Full scientific name Marinobacter psychrophilus Zhang et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
32559	negative	1.75 µm	0.35 µm	rod-shaped
125438	negative
125439	negative

Pigmentation

32559

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32559	positive	growth	0-22	psychrophilic
32559	positive	optimum	17	psychrophilic
67770	positive	growth	18	psychrophilic

Culture pH

@ref	Ability	Type	PH
32559	positive	optimum	7.5
32559	positive	growth	05-10

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32559	NaCl	positive	growth	02-08 %

Observation

67770

Observationquinones: Q-9

Spore formation

@ref	Spore formation	Confidence
125439		98.5

Enzymes

@ref	Value	Activity	Ec
32559	alkaline phosphatase	+	3.1.3.1
32559	catalase	+	1.11.1.6
32559	cytochrome oxidase	+	1.9.3.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32559	22599 ChEBI	arabinose	+	carbon source
32559	17754 ChEBI	glycerol	+	carbon source
32559	17632 ChEBI	nitrate	+	reduction
32559	17822 ChEBI	serine	+	carbon source
32559	17992 ChEBI	sucrose	+	carbon source

Oxygen tolerance

@ref	Oxygen tolerance
32559	aerobe
125439	obligate aerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type
32559	seawater
67770	Sea-ice samples collected off the Canadian Basin of the Arctic Ocean (78° 23' 14" N 149° 06' 55" W)

Taxonmaps

69479

Global distribution of 16S sequence DQ060402 (>99% sequence identity) for Marinobacter psychrophilus subclade from Microbeatlas

Aquatic Samples	1732
Soil Samples	171
Animal Samples	122
Plant Samples	34
Total Samples	2059

Safety information

Sequence information

GC content

@ref	GC-content (mol%)
32559	55.4
67770	55.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32559	Marinobacter psychrophilus strain 20041 16S ribosomal RNA gene, partial sequence	DQ060402	1506		330734

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Marinobacter psychrophilus 20041	GCA_001043175	complete		330734
66792	Marinobacter psychrophilus 20041	2636415955	complete	JGI IMG/M	330734

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Marinobacter psychrophilus 20041
NCBI: GCA_001043175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.50	no
125439	motility	BacteriaNetⓘ	yes	84.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.20	no

Predictions from Diaspora project based on:
Marinobacter psychrophilus 20041
NCBI: GCA_001043175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	97.78	yes
125438	aerobic	aerobicⓘ	yes	84.35	yes
125438	spore-forming	spore-formingⓘ	no	86.62	no
125438	thermophilic	thermophileⓘ	no	97.82	yes
125438	flagellated	motile2+ⓘ	yes	85.73	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Complete genome of Marinobacter psychrophilus strain 20041(T) isolated from sea-ice of the Canadian Basin.	Song L, Ren L, Wang L, Yu Y, Wang X, Liu G	Mar Genomics	10.1016/j.margen.2016.02.001	2016
Phylogeny	Marinobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from the Arctic.	Zhang DC, Li HR, Xin YH, Chi ZM, Zhou PJ, Yu Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65690-0	2008

Culture collection no.

Culture collection no.
CGMCC 1.6499
JCM 14643
20041
BCRC 80070

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32559	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28777 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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