Cite this strain

Lactiplantibacillus plajomi (CIP 110952, NBRC 107333, BCC 38054)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135967

Type strain

Strain Designation NB53

Culture col. no. CIP 110952 NBRC 107333 BCC 38054 NB53

NCBI tax ID(s) 1457217

Special Collections CIP

Links

Name and taxonomic classification

Lactiplantibacillus plajomi NB53 is a mesophilic, Gram-positive bacterium of the family Lactobacillaceae.

Gram-positive mesophilic genome sequence 16S sequence Bacteria

SI-ID 414004

CIP 110952

Last LPSN update 2024-12-09 10:49:32

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactiplantibacillus

Species Lactiplantibacillus plajomi

Full scientific name Lactiplantibacillus plajomi (Miyashita et al. 2015) Zheng et al. 2020

Synonyms (1)

Lactobacillus plajomi

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	93.963
35258

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
35258	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
35258	CIP Medium 40

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
35258	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.013

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	94.5

Isolation, sampling and environmental information

Isolation

@ref	Country	Country ISO 3 Code	Continent
35258	Thailand	THA	Asia
35258	Thailand	THA	Asia

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
35258	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Lactobacillus plajomi gene for 16S ribosomal RNA, partial sequence.	AB907190	1492		1457217

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Lactiplantibacillus plajomi NBRC 107333	GCA_005405405	scaffold		1457217
66792	Lactobacillus plajomi strain NBRC 107333	1457217.4	wgs	PATRIC	1457217
66792	Lactiplantibacillus plajomi NBRC 107333	2921431476	draft	JGI IMG/M	1457217

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Lactiplantibacillus plajomi NBRC 107333
NCBI: GCA_005405405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	51.90	no
125439	motility	BacteriaNetⓘ	no	50.30	no
125439	gram_stain	BacteriaNetⓘ	positive	70.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	94.50	no

Predictions from Diaspora project based on:
Lactiplantibacillus plajomi NBRC 107333
NCBI: GCA_005405405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.96	no
125438	anaerobic	anaerobicⓘ	no	86.77	no
125438	aerobic	aerobicⓘ	no	96.04	no
125438	spore-forming	spore-formingⓘ	no	91.01	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	88.50	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
93224	414004	CIP 110952

Culture collection no.

Culture collection no.
CIP 110952
NBRC 107333
BCC 38054
NB53

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35258	Collection of Institut Pasteur ; Curators of the CIP; CIP 110952
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#93224	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID414004.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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