Cite this strain

Streptococcus oricebi (CCUG 70868, DSM 100101, JCM 30719)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140138

Type strain

Strain Designation M8

Culture col. no. CCUG 70868 DSM 100101 JCM 30719 M8

NCBI tax ID(s) 1547447

Special Collections DSMZ CCUG JCM Literature strains

Links

Name and taxonomic classification

Streptococcus oricebi M8 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from oral cavity of tufted capuchin .

Gram-positive coccus-shaped colony-forming facultative anaerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 407373

DSM 100101

Last LPSN update 2024-12-09 10:49:59

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Streptococcaceae

Genus Streptococcus

Species Streptococcus oricebi

Full scientific name Streptococcus oricebi Saito et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility
43819	positive	0.8-1 µm	coccus-shaped
125438

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony size	Colony color	Colony shape	Incubation period	Medium used
43819	alpha	1	0.6-0.9 mm	White	circular	2 days	Blood agar
43819				Dark blue			MS agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43819	Blood agar
43819	MS agar
42745	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
42745	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42745	positive	growth	37	mesophilic
63760	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Observation

@ref	Observation
43819	Colonies on MS agar are small and have a crinkled appearance
43819	Cells react with Lancefield group A antisera.

Spore formation

@ref	Spore formation
43819
125439

Enzymes

@ref	Value	Activity	Ec
43819	acid phosphatase	+	3.1.3.2
43819	alanine arylamidase	+	3.4.11.2
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
43819	alkaline phosphatase	-	3.1.3.1
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
43819	alpha-chymotrypsin	-	3.4.21.1
43819	alpha-fucosidase	-	3.2.1.51
43819	alpha-galactosidase	-	3.2.1.22
43819	alpha-glucosidase	-	3.2.1.20
43819	alpha-mannosidase	-	3.2.1.24
43819	arginine dihydrolase	+	3.5.3.6
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
43819	beta-galactosidase	-	3.2.1.23
43819	beta-glucosidase	+	3.2.1.21
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
43819	beta-glucuronidase	-	3.2.1.31
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
43819	catalase	-	1.11.1.6
43819	cystine arylamidase	-	3.4.11.3
43819	esterase (C 4)	-
43819	esterase Lipase (C 8)	-
43819	glycyl tryptophan arylamidase	-
68381	glycyl tryptophan arylamidase	-		from API rID32STR
43819	leucine arylamidase	+	3.4.11.1
43819	lipase (C 14)	-
43819	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43819	naphthol-AS-BI-phosphohydrolase	+
43819	phenylalanine arylamidase	+
43819	proline-arylamidase	+	3.4.11.5
43819	pyroglutamic acid arylamidase	-
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
43819	trypsin	-	3.4.21.4
43819	urease	-	3.5.1.5
68381	urease	-	3.5.1.5	from API rID32STR
43819	valine arylamidase	+

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43819	15688 ChEBI	acetoin
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43819	15688 ChEBI	acetoin	+
68381	15688 ChEBI	acetoin	-	from API rID32STR

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43819	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43819	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
43819	27613 ChEBI	amygdalin	-	builds acid from
43819	18305 ChEBI	arbutin	-	builds acid from
43819	29016 ChEBI	arginine	+	hydrolysis
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
43819	17057 ChEBI	cellobiose	-	builds acid from
43819	23456 ChEBI	cyclodextrin	-	builds acid from
43819	17108 ChEBI	D-arabinose	-	builds acid from
43819	18333 ChEBI	D-arabitol	-	builds acid from
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
43819	15824 ChEBI	D-fructose	+	builds acid from
43819	28847 ChEBI	D-fucose	-	builds acid from
43819	12936 ChEBI	D-galactose	-	builds acid from
43819	17634 ChEBI	D-glucose	+	builds acid from
43819	62318 ChEBI	D-lyxose	-	builds acid from
43819	16899 ChEBI	D-mannitol	-	builds acid from
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
43819	16024 ChEBI	D-mannose	+	builds acid from
43819	16988 ChEBI	D-ribose	-	builds acid from
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
43819	17924 ChEBI	D-sorbitol	-	builds acid from
43819	16443 ChEBI	D-tagatose	-	builds acid from
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
43819	65327 ChEBI	D-xylose	-	builds acid from
43819	17113 ChEBI	erythritol	-	builds acid from
43819	4853 ChEBI	esculin	+	hydrolysis
43819	16813 ChEBI	galactitol	-	builds acid from
43819	28066 ChEBI	gentiobiose	-	builds acid from
43819	24265 ChEBI	gluconate	-	builds acid from
43819	17754 ChEBI	glycerol	-	builds acid from
43819	28087 ChEBI	glycogen	-	builds acid from
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
43819	606565 ChEBI	hippurate	-	hydrolysis
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
43819	15443 ChEBI	inulin	-	builds acid from
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
43819	18403 ChEBI	L-arabitol	-	builds acid from
43819	18287 ChEBI	L-fucose	-	builds acid from
43819	62345 ChEBI	L-rhamnose	-	builds acid from
43819	17266 ChEBI	L-sorbose	-	builds acid from
43819	65328 ChEBI	L-xylose	-	builds acid from
43819	17716 ChEBI	lactose	+	builds acid from
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
43819	17306 ChEBI	maltose	+	builds acid from
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
43819	6731 ChEBI	melezitose	-	builds acid from
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
43819	28053 ChEBI	melibiose	-	builds acid from
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
43819	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43819	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43819	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from
68381	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from	from API rID32STR
43819	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43819	17268 ChEBI	myo-inositol	-	builds acid from
43819	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43819	27941 ChEBI	pullulan	-	builds acid from
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
43819	16634 ChEBI	raffinose	+	builds acid from
68381	16634 ChEBI	raffinose	+	builds acid from	from API rID32STR
43819	15963 ChEBI	ribitol	-	builds acid from
43819	17814 ChEBI	salicin	+	builds acid from
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
43819	28017 ChEBI	starch	-	builds acid from
43819	17992 ChEBI	sucrose	+	builds acid from
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
43819	27082 ChEBI	trehalose	+	builds acid from
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
43819	32528 ChEBI	turanose	-	builds acid from
43819	16199 ChEBI	urea	-	hydrolysis
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
43819	17151 ChEBI	xylitol	-	builds acid from

Oxygen tolerance

@ref	Oxygen tolerance
43819	facultative anaerobe
63760	microaerophile
125439	microaerophile

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
42745	+	+	+	-	+/-	-	-	-	-	+	+	+	+	-	-	-	-	+	+/-	-	+/-	-	-	-	-	+	-	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Primates
#Host Body-Site	#Oral cavity and airways	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
42745	oral cavity of tufted capuchin (Cebus apella)	Cebus apella	Nasu World Monkey Park, Tochigi	Japan	JPN	Asia
43819	The oral cavity of a tufted capuchin (Nasu World Monkey Park)		Tochigi	Japan	JPN	Asia
63760	Oral cavity,tufted capuchin
67770	Oral cavity of tufted capuchin (Cebus apella)	Cebus apella

Taxonmaps

69479

Global distribution of 16S sequence LC002970 (>99% sequence identity) for Streptococcus oricebi subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	1
Animal Samples	523
Plant Samples	17
Total Samples	549

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
42745	42.4	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42745	Streptococcus oricebi gene for 16S ribosomal RNA, partial sequence	LC002970	1504		1547447
124043	Streptococcus oricebi JCM 30719 gene for 16S rRNA, partial sequence.	LC638727	1477		1547447

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Streptococcus oricebi CCUG 70868	GCA_017883985	scaffold		1547447
66792	Streptococcus oricebi strain CCUG 70868	1547447.3	wgs	PATRIC	1547447

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Streptococcus oricebi CCUG 70868
NCBI: GCA_017883985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	no	65.20	no
125439	gram_stain	BacteriaNetⓘ	positive	83.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	93.40	no

Predictions from Diaspora project based on:
Streptococcus oricebi CCUG 70868
NCBI: GCA_017883985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.94	yes
125438	anaerobic	anaerobicⓘ	no	89.54	yes
125438	aerobic	aerobicⓘ	no	94.92	yes
125438	spore-forming	spore-formingⓘ	no	82.09	yes
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	no	90.00	yes

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus oricebi sp. nov., isolated from the oral cavity of tufted capuchin.	Saito M, Shinozaki-Kuwahara N, Hirasawa M, Takada K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000834	2015

Straininfo Link

@ref	Straininfo	Culture collections
96531	407373	DSM 100101

Culture collection no.

Culture collection no.
CCUG 70868
DSM 100101
JCM 30719
M8

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42745	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100101
#43819	M. Saito, N. Shinozaki-Kuwahara, M. Hirasawa, K. Takada: Streptococcus oricebi sp. nov., isolated from the oral cavity of tufted capuchin. IJSEM 66: 1063 - 1067 2016 ( DOI 10.1099/ijsem.0.000834 , PubMed 26651833 )
#63760	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70868
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68381	Automatically annotated from API rID32STR .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#96531	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407373.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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