Cite this strain

Achromobacter denitrificans (CCUG 3353, IAM 12556, NCIMB 9387)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141589

Type strain

Culture col. no. CCUG 3353 IAM 12556 NCIMB 9387 LMG 3412 JCM 20635

NCBI tax ID(s) 32002

Special Collections CCUG JCM

Links

Name and taxonomic classification

Achromobacter denitrificans CCUG 3353 is a mesophilic, Gram-negative bacterium that was isolated from Soil or water using Ls-alloisocitrate.

Gram-negative mesophilic genome sequence Bacteria

SI-ID 818

LMG 3412, NCIB 9387, NCIMB 9387, IAM12556, CCUG 3353, JCM 20635

Last LPSN update 2024-12-09 10:50:09

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter denitrificans

Full scientific name Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

Synonyms (3)

Alcaligenes denitrificans
Achromobacter xylosoxidans subsp. denitrificans
Alcaligenes xylosoxidans subsp. denitrificans

BacDive ID	Other strains from **Achromobacter denitrificans** (33)	Type strain
318	A. denitrificans 12, 55B, DSM 30026, ATCC 15173, NCTC 8582, ... (type strain)
316	A. denitrificans DSM 4612, NCIB 11961
317	A. denitrificans CMA1, DSM 11850
135302	A. denitrificans CIP 100014
135363	A. denitrificans CIP 100017
136801	A. denitrificans 81-75, CIP 100013
136804	A. denitrificans 111-75, CIP 100018
136807	A. denitrificans Aulb.court, CIP 60.83, CCUG 61949, LMG 1860, ...
136819	A. denitrificans 75-75, CIP 100011
136820	A. denitrificans 76-75, CIP 100012
136821	A. denitrificans 101-75, CIP 100015
136826	A. denitrificans 73-75, CIP 100010
136830	A. denitrificans 103-75, CIP 100016
137270	A. denitrificans 204-83, CIP 100140
137333	A. denitrificans 196-83, CIP 100142
137336	A. denitrificans 278.82, CIP 105844
137545	A. denitrificans 318-75, A3b, CIP 100020
138418	A. denitrificans CIP 102277
141232	A. denitrificans CCUG 307
141241	A. denitrificans CCUG 366, LMG 3459, LMG 3342
141246	A. denitrificans CCUG 379 A
141415	A. denitrificans CCUG 1608 A
141496	A. denitrificans CCUG 2368
143451	A. denitrificans CCUG 19225
145806	A. denitrificans CCUG 29644
147886	A. denitrificans CCUG 34433
152884	A. denitrificans CCUG 47876
154536	A. denitrificans CCUG 54280
156250	A. denitrificans CCUG 60861
156464	A. denitrificans CCUG 61950, LMG 26680
162416	A. denitrificans JCM 19165
162975	A. denitrificans JCM 20641, IAM 12563, NCIMB 10771
162976	A. denitrificans JCM 20642, IAM 12564, NCIMB 9550

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.828

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
44647	Soil or water using Ls-alloisocitrate
67770	Soil or water using allo-isocitrate as sole carbon source

Safety information

Sequence information

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Achromobacter deleyi strain LMG 3412	1353891.8	wgs	PATRIC	1353891
67770	Achromobacter deleyi LMG 3412	GCA_902860095	contig		1353891

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Achromobacter deleyi LMG 3412
NCBI: GCA_902860095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.50	no
125439	motility	BacteriaNetⓘ	yes	51.70	no
125439	gram_stain	BacteriaNetⓘ	positive	71.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.90	no

Predictions from Diaspora project based on:
Achromobacter deleyi strain LMG 3412
PATRIC: 1353891.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	no
125438	anaerobic	anaerobicⓘ	no	98.19	no
125438	spore-forming	spore-formingⓘ	no	88.86	no
125438	aerobic	aerobicⓘ	yes	88.83	no
125438	thermophilic	thermophileⓘ	no	98.96	yes
125438	flagellated	motile2+ⓘ	yes	83.87	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
97231	818	LMG 3412, NCIB 9387, NCIMB 9387, IAM12556, CCUG 3353, JCM 20635

Culture collection no.

Culture collection no.
CCUG 3353
IAM 12556
NCIMB 9387
LMG 3412
JCM 20635

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44647	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3353
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#97231	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID818.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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