Cite this strain

Fusobacterium necrogenes (CCUG 4949, ATCC 25556, NCTC 10723)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141696

Type strain

Culture col. no. CCUG 4949 ATCC 25556 NCTC 10723

NCBI tax ID(s) 858

Special Collections CCUG

Links

Name and taxonomic classification

Fusobacterium necrogenes CCUG 4949 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from Duck caecum.

spore-forming anaerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 38595

ATCC 25556, NCTC 10723, CCUG 4949

Last LPSN update 2024-12-09 10:50:09

Domain Bacteria

Phylum Fusobacteriota

Class Fusobacteriia

Order Fusobacteriales

Family Fusobacteriaceae

Genus Fusobacterium

Species Fusobacterium necrogenes

Full scientific name Fusobacterium necrogenes (Weinberg et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)

Synonyms (1)

"Bacillus necrogenes"

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
44816	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
44816	anaerobe
125438	anaerobe
125439	anaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Birds
#Host Body-Site	#Gastrointestinal tract

Isolation

44816

Sample typeDuck caecum

Safety information

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Fusobacterium necrogenes 16S rRNA gene, strain ATCC 25556	AJ867034	1455		858

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Fusobacterium necrogenes NCTC10723	GCA_900450765	contig		858
66792	Fusobacterium necrogenes strain NCTC10723	858.4	wgs	PATRIC	858
66792	Fusobacterium necrogenes NCTC 10723	2869315825	draft	JGI IMG/M	858

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Fusobacterium necrogenes NCTC10723
NCBI: GCA_900450765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	64.10	no
125439	motility	BacteriaNetⓘ	yes	69.80	no
125439	gram_stain	BacteriaNetⓘ	positive	80.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.90	no

Predictions from Diaspora project based on:
Fusobacterium necrogenes strain NCTC10723
PATRIC: 858.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	85.55	no
125438	anaerobic	anaerobicⓘ	yes	92.95	yes
125438	aerobic	aerobicⓘ	no	97.82	yes
125438	spore-forming	spore-formingⓘ	no	72.08	no
125438	thermophilic	thermophileⓘ	no	89.70	yes
125438	flagellated	motile2+ⓘ	no	82.70	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
97329	38595	ATCC 25556, NCTC 10723, CCUG 4949

Culture collection no.

Culture collection no.
CCUG 4949
ATCC 25556
NCTC 10723

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44816	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4949
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#97329	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38595.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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