Cite this strain

Varibaculum cambriense (CCUG 20977)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 143686

Type strain

Culture col. no. CCUG 20977

NCBI tax ID(s) 184870

Special Collections CCUG

Links

Name and taxonomic classification

Varibaculum cambriense CCUG 20977 is a bacterium that was isolated from Human abscess,28-yr-old female.

Bacteria

SI-ID 51415

CCUG 20977

Last LPSN update 2024-12-09 10:50:23

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Varibaculum

Species Varibaculum cambriense

Full scientific name Varibaculum cambriense corrig. Hall et al. 2003

Synonyms (1)

Varibaculum cambriensis

BacDive ID	Other strains from **Varibaculum cambriense** (10)	Type strain
210	V. cambriense R12359, DSM 15806, CCUG 44998, CIP 107344 (type strain)
143685	V. cambriense CCUG 20976
147803	V. cambriense CCUG 34258
149327	V. cambriense CCUG 37510
151827	V. cambriense CCUG 44992
151882	V. cambriense CCUG 45111
151883	V. cambriense CCUG 45112
151884	V. cambriense CCUG 45113
152496	V. cambriense CCUG 46939
153984	V. cambriense CCUG 51839

Morphology

Culture and growth conditions

Physiology and metabolism

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68382	beta-galactosidase	+	3.2.1.23	from API zym
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68382	beta-glucosidase	-	3.2.1.21	from API zym
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68379	catalase	-	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68381	glycyl tryptophan arylamidase	-		from API rID32STR
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68381	urease	-	3.5.1.5	from API rID32STR
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	-	from API rID32STR

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68381	606565 ChEBI	hippurate	+	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68381	17306 ChEBI	maltose	-	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	-	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Fatty acid profile

Metadata FA analysis

@ref

47244

Fatty acid	Percentage	ECL
C18:1 ω9c	35.2	17.769
C16:0	31.6	16
C18:2 ω6,9c/C18:0 ANTE	16.7	17.724
C18:0	9.2	18
C16:1 ω7c	2.9	15.819
C14:0	1.4	14
C17:1 ISO I/C16:0 DMA	1.1	16.481
C17:0	1	17
C19:1 ISO I	0.9	18.473

Metadata FA analysis

@ref

47244

Fatty acid	Percentage	ECL
C16:0	24.7	16
C18:1 ω9c	22.1	17.769
C18:2 ω6,9c/C18:0 ANTE	19.5	17.724
C18:0	13.4	18
C18:1 ω9c DMA	6.9	18.226
unknown 18.177	5.2	18.177
C16:1 ω7c	2.9	15.819
C19:1 ISO I	2	18.473
C17:0 anteiso	1.8	16.722
C14:0	1.6	14

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
47244	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
47244	+	-	-	-	-	+	+	-	-	-	-	-	+	+	-	-	+	-	+	-	-

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
47244	-	-	+	+	-	+	-	-	-	-	-	+	not determinedn.d.	+	-	+	-	-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
47244	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Female
#Host Body-Site	#Other	#Abscess
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
47244	Human abscess,28-yr-old female	1987-07-29	Skövde	Sweden	SWE	Europe

Safety information

Sequence information

Genome-based predictions

External links

Straininfo Link

@ref	Straininfo	Culture collections
99016	51415	CCUG 20977

Culture collection no.

	Culture collection no.CCUG 20977
	Linkhttps://www.ccug.se/strain?id=20977

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47244	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20977
#68379	Automatically annotated from API Coryne .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#99016	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID51415.1 )

Rate our new design

Content

About us

Varibaculum cambriense (CCUG 20977)

Name and taxonomic classification

Morphology

Culture and growth conditions