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Cite this strain Archive
Bacterial strain

Shigella flexneri (CCUG 21251)

BacDive ID 143797
Type strain
Culture col. no. CCUG 21251
NCBI tax ID(s) 623
Special Collections CCUG
Links

Morphology

Culture and growth conditions

Culture temp

@refGrowthTypeTemperature (°C)Range
47369positivegrowth37mesophilic

Physiology and metabolism

Enzymes

@refValueActivityEc
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374alpha-maltosidase-
68368arginine dihydrolase-3.5.3.6
68374arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
68374beta-galactosidase-3.2.1.23
68374beta-glucosidase-3.2.1.21
68374beta-glucuronidase-3.2.1.31
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68374L-aspartate arylamidase-3.4.11.21
68374lipase-
68374lysine decarboxylase-4.1.1.18
68368lysine decarboxylase-4.1.1.18
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374ornithine decarboxylase-4.1.1.17
68368ornithine decarboxylase-4.1.1.17
68368tryptophan deaminase-4.1.99.1
68374urease-3.5.1.5
68368urease-3.5.1.5

Metabolite production

@refChebi-IDMetaboliteProduction
6836815688 ChEBIacetoin
6836816136 ChEBIhydrogen sulfide
6837435581 ChEBIindole
6836835581 ChEBIindole

Metabolite tests

@refChebi-IDMetaboliteVoges-proskauer-test
6836815688 ChEBIacetoin+
6837435581 ChEBIindole
6836835581 ChEBIindole

Metabolite utilization

@refChebi-IDMetaboliteUtilization activityKind of utilization tested
6836827613 ChEBIamygdalin-fermentation
6837429016 ChEBIarginine-hydrolysis
6836829016 ChEBIarginine-hydrolysis
6837417057 ChEBIcellobiose-builds acid from
6836816947 ChEBIcitrate-assimilation
6837418333 ChEBID-arabitol-builds acid from
6837418024 ChEBID-galacturonic acid+builds acid from
6837417634 ChEBID-glucose-builds acid from
6836817634 ChEBID-glucose+fermentation
6837416899 ChEBID-mannitol-builds acid from
6836816899 ChEBID-mannitol+fermentation
683685291 ChEBIgelatin-hydrolysis
6837430849 ChEBIL-arabinose-builds acid from
6836830849 ChEBIL-arabinose-fermentation
6837418403 ChEBIL-arabitol-builds acid from
6837462345 ChEBIL-rhamnose-builds acid from
6836862345 ChEBIL-rhamnose-fermentation
6837425094 ChEBIlysine-degradation
6836825094 ChEBIlysine-degradation
6837415792 ChEBImalonate-assimilation
6837417306 ChEBImaltose-builds acid from
6836828053 ChEBImelibiose-fermentation
6837417268 ChEBImyo-inositol-builds acid from
6836817268 ChEBImyo-inositol-fermentation
6837418257 ChEBIornithine-degradation
6836818257 ChEBIornithine-degradation
6837418394 ChEBIpalatinose-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837415963 ChEBIribitol-builds acid from
6837430911 ChEBIsorbitol-builds acid from
6836830911 ChEBIsorbitol-fermentation
6837417992 ChEBIsucrose-builds acid from
6836817992 ChEBIsucrose-fermentation
6837427082 ChEBItrehalose-builds acid from
6837427897 ChEBItryptophan+energy source
6836827897 ChEBItryptophan+energy source
6837416199 ChEBIurea-hydrolysis
6836816199 ChEBIurea-hydrolysis

Pathway annotation

Computationally determined by EnzymeDetector
@ref pathway enzyme coverage annotated reactions external links
66794 L-lactaldehyde degradation 100
 3 of 3 MMTBBRENDA
66794 coenzyme A metabolism 100
 4 of 4 MMTBBRENDA
66794 anapleurotic synthesis of oxalacetate 100
 1 of 1 MMTBBRENDA
66794 aerobactin biosynthesis 100
 1 of 1 MMTBBRENDA
66794 4-hydroxyphenylacetate degradation 100
 10 of 10 MMTBBRENDA
66794 ppGpp biosynthesis 100
 4 of 4 MMTBBRENDA
66794 methylglyoxal degradation 100
 5 of 5 MMTBBRENDA
66794 taurine degradation 100
 1 of 1 MMTBBRENDA
66794 adipate degradation 100
 2 of 2 MMTBBRENDA
66794 suberin monomers biosynthesis 100
 2 of 2 MMTBBRENDA
66794 CDP-diacylglycerol biosynthesis 100
 2 of 2 MMTBBRENDA
66794 UDP-GlcNAc biosynthesis 100
 3 of 3 MMTBBRENDA
66794 starch degradation 100
 10 of 10 MMTBBRENDA
66794 biotin biosynthesis 100
 4 of 4 MMTBBRENDA
66794 sulfopterin metabolism 100
 4 of 4 MMTBBRENDA
66794 formaldehyde oxidation 100
 3 of 3 MMTBBRENDA
66794 acetate fermentation 100
 4 of 4 MMTBBRENDA
66794 enterobactin biosynthesis 100
 3 of 3 MMTBBRENDA
66794 tetrahydrofolate metabolism 100
 14 of 14 MMTBBRENDA
66794 folate polyglutamylation 100
 1 of 1 MMTBBRENDA
66794 ubiquinone biosynthesis 100
 7 of 7 MMTBBRENDA
66794 sulfoquinovose degradation 100
 3 of 3 MMTBBRENDA
66794 gluconeogenesis 100
 8 of 8 MMTBBRENDA
66794 vitamin K metabolism 100
 5 of 5 MMTBBRENDA
66794 palmitate biosynthesis 95.45
 21 of 22 MMTBBRENDA
66794 NAD metabolism 94.44
 17 of 18 MMTBBRENDA
66794 heme metabolism 92.86
 13 of 14 MMTBBRENDA
66794 glutathione metabolism 92.86
 13 of 14 MMTBBRENDA
66794 photosynthesis 92.86
 13 of 14 MMTBBRENDA
66794 vitamin B6 metabolism 90.91
 10 of 11 MMTBBRENDA
66794 pentose phosphate pathway 90.91
 10 of 11 MMTBBRENDA
66794 Entner Doudoroff pathway 90
 9 of 10 MMTBBRENDA
66794 threonine metabolism 90
 9 of 10 MMTBBRENDA
66794 valine metabolism 88.89
 8 of 9 MMTBBRENDA
66794 serine metabolism 88.89
 8 of 9 MMTBBRENDA
66794 lipid A biosynthesis 88.89
 8 of 9 MMTBBRENDA
66794 chorismate metabolism 88.89
 8 of 9 MMTBBRENDA
66794 molybdenum cofactor biosynthesis 88.89
 8 of 9 MMTBBRENDA
66794 C4 and CAM-carbon fixation 87.5
 7 of 8 MMTBBRENDA
66794 degradation of sugar alcohols 87.5
 14 of 16 MMTBBRENDA
66794 isoleucine metabolism 87.5
 7 of 8 MMTBBRENDA
66794 reductive acetyl coenzyme A pathway 85.71
 6 of 7 MMTBBRENDA
66794 vitamin B1 metabolism 84.62
 11 of 13 MMTBBRENDA
66794 glycolate and glyoxylate degradation 83.33
 5 of 6 MMTBBRENDA
66794 purine metabolism 82.98
 78 of 94 MMTBBRENDA
66794 gallate degradation 80
 4 of 5 MMTBBRENDA
66794 peptidoglycan biosynthesis 80
 12 of 15 MMTBBRENDA
66794 glycogen metabolism 80
 4 of 5 MMTBBRENDA
66794 metabolism of amino sugars and derivatives 80
 4 of 5 MMTBBRENDA
66794 pyrimidine metabolism 80
 36 of 45 MMTBBRENDA
66794 alanine metabolism 79.31
 23 of 29 MMTBBRENDA
66794 glutamate and glutamine metabolism 78.57
 22 of 28 MMTBBRENDA
66794 citric acid cycle 78.57
 11 of 14 MMTBBRENDA
66794 aspartate and asparagine metabolism 77.78
 7 of 9 MMTBBRENDA
66794 d-mannose degradation 77.78
 7 of 9 MMTBBRENDA
66794 phenylalanine metabolism 76.92
 10 of 13 MMTBBRENDA
66794 urea cycle 76.92
 10 of 13 MMTBBRENDA
66794 glycogen biosynthesis 75
 3 of 4 MMTBBRENDA
66794 lactate fermentation 75
 3 of 4 MMTBBRENDA
66794 dTDPLrhamnose biosynthesis 75
 6 of 8 MMTBBRENDA
66794 CMP-KDO biosynthesis 75
 3 of 4 MMTBBRENDA
66794 6-hydroxymethyl-dihydropterin diphosphate biosynthesis 75
 6 of 8 MMTBBRENDA
66794 flavin biosynthesis 73.33
 11 of 15 MMTBBRENDA
66794 oxidative phosphorylation 72.53
 66 of 91 MMTBBRENDA
66794 degradation of sugar acids 72
 18 of 25 MMTBBRENDA
66794 cardiolipin biosynthesis 71.43
 5 of 7 MMTBBRENDA
66794 lipid metabolism 70.97
 22 of 31 MMTBBRENDA
66794 glycolysis 70.59
 12 of 17 MMTBBRENDA
66794 leucine metabolism 69.23
 9 of 13 MMTBBRENDA
66794 non-pathway related 68.42
 26 of 38 MMTBBRENDA
66794 degradation of pentoses 67.86
 19 of 28 MMTBBRENDA
66794 allantoin degradation 66.67
 6 of 9 MMTBBRENDA
66794 CO2 fixation in Crenarchaeota 66.67
 6 of 9 MMTBBRENDA
66794 cyanate degradation 66.67
 2 of 3 MMTBBRENDA
66794 octane oxidation 66.67
 2 of 3 MMTBBRENDA
66794 selenocysteine biosynthesis 66.67
 4 of 6 MMTBBRENDA
66794 methane metabolism 66.67
 2 of 3 MMTBBRENDA
66794 acetoin degradation 66.67
 2 of 3 MMTBBRENDA
66794 tryptophan metabolism 65.79
 25 of 38 MMTBBRENDA
66794 isoprenoid biosynthesis 65.38
 17 of 26 MMTBBRENDA
66794 proline metabolism 63.64
 7 of 11 MMTBBRENDA
66794 ketogluconate metabolism 62.5
 5 of 8 MMTBBRENDA
66794 methionine metabolism 61.54
 16 of 26 MMTBBRENDA
66794 degradation of hexoses 61.11
 11 of 18 MMTBBRENDA
66794 hydrogen production 60
 3 of 5 MMTBBRENDA
66794 lipoate biosynthesis 60
 3 of 5 MMTBBRENDA
66794 propanol degradation 57.14
 4 of 7 MMTBBRENDA
66794 cysteine metabolism 55.56
 10 of 18 MMTBBRENDA
66794 nitrate assimilation 55.56
 5 of 9 MMTBBRENDA
66794 phenol degradation 55
 11 of 20 MMTBBRENDA
66794 arginine metabolism 54.17
 13 of 24 MMTBBRENDA
66794 sulfate reduction 53.85
 7 of 13 MMTBBRENDA
66794 3-phenylpropionate degradation 53.33
 8 of 15 MMTBBRENDA
66794 lysine metabolism 52.38
 22 of 42 MMTBBRENDA
66794 histidine metabolism 51.72
 15 of 29 MMTBBRENDA
66794 carnitine metabolism 50
 4 of 8 MMTBBRENDA
66794 myo-inositol biosynthesis 50
 5 of 10 MMTBBRENDA
66794 toluene degradation 50
 2 of 4 MMTBBRENDA
66794 pantothenate biosynthesis 50
 3 of 6 MMTBBRENDA
66794 ribulose monophosphate pathway 50
 1 of 2 MMTBBRENDA
66794 propionate fermentation 50
 5 of 10 MMTBBRENDA
66794 quinate degradation 50
 1 of 2 MMTBBRENDA
66794 butanoate fermentation 50
 2 of 4 MMTBBRENDA
66794 ethanol fermentation 50
 1 of 2 MMTBBRENDA
66794 cis-vaccenate biosynthesis 50
 1 of 2 MMTBBRENDA
66794 tyrosine metabolism 50
 7 of 14 MMTBBRENDA
66794 polyamine pathway 47.83
 11 of 23 MMTBBRENDA
66794 ascorbate metabolism 45.45
 10 of 22 MMTBBRENDA
66794 d-xylose degradation 45.45
 5 of 11 MMTBBRENDA
66794 metabolism of disaccharids 45.45
 5 of 11 MMTBBRENDA
66794 degradation of aromatic, nitrogen containing compounds 41.67
 5 of 12 MMTBBRENDA
66794 ethylmalonyl-CoA pathway 40
 2 of 5 MMTBBRENDA
66794 coenzyme M biosynthesis 40
 4 of 10 MMTBBRENDA
66794 glycine metabolism 40
 4 of 10 MMTBBRENDA
66794 3-chlorocatechol degradation 40
 2 of 5 MMTBBRENDA
66794 phosphatidylethanolamine bioynthesis 38.46
 5 of 13 MMTBBRENDA
66794 phenylpropanoid biosynthesis 38.46
 5 of 13 MMTBBRENDA
66794 acetyl CoA biosynthesis 33.33
 1 of 3 MMTBBRENDA
66794 IAA biosynthesis 33.33
 1 of 3 MMTBBRENDA
66794 methanogenesis from CO2 33.33
 4 of 12 MMTBBRENDA
66794 sphingosine metabolism 33.33
 2 of 6 MMTBBRENDA
66794 vitamin B12 metabolism 32.35
 11 of 34 MMTBBRENDA
66794 androgen and estrogen metabolism 31.25
 5 of 16 MMTBBRENDA
66794 arachidonic acid metabolism 27.78
 5 of 18 MMTBBRENDA
66794 cyclohexanol degradation 25
 1 of 4 MMTBBRENDA

Oxygen tolerance

47369Oxygen toleranceaerobe

Fatty acid profile

Metadata FA analysis
type of FA analysis whole cell analysis
method/protocol CCUG
@ref 47369
Fatty acid Percentage ECL
C16:0 21.7
 16
C17:0 CYCLO 19.8
 16.888
C18:1 ω7c /12t/9t 13.1
 17.824
C16:1 ω7c 9.3
 15.819
C15:0 8.1
 15
C14:0 7.7
 14
C14:0 3OH/C16:1 ISO I 7.5
 15.485
C12:0 4.4
 12
C19:0 CYCLO ω8c 3.5
 18.9
C17:0 2.2
 17
C13:0 1.4
 13
C13:0 3OH/C15:1 i I/H 1.4
 14.469

Isolation, sampling and environmental information

Isolation source categories

Cat1Cat2
#Host#Human
#Host Body Product#Gastrointestinal tract
#Infection#Disease
#Infection#Patient

Isolation

@refSample typeSampling dateCountryCountry ISO 3 CodeContinent
47369Human feces,diarrhea,contracted in Egypt1987-07-21EgyptEGYAfrica

Safety information

Sequence information

Genome-based predictions

External links

@refStraininfoCulture collections
9910357019CCUG 21251

Culture collection no.

Culture collection no.CCUG 21251
Linkhttps://www.ccug.se/strain?id=21251

References

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#47369 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 21251
#66794 Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68368 Automatically annotated from API 20E .
#68374 Automatically annotated from API ID32E .
#99103 Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID57019.1 )

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