Cite this strain

Streptomyces phaeofaciens (DSM 40367, ATCC 15034, CBS 426.64)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15468

Type strain

Culture col. no. DSM 40367 ATCC 15034 CBS 426.64 CBS 637.72 IFO 13372 12 more

NCBI tax ID(s) 1306182 68254

Special Collections DSMZ JCM

Links

Name and taxonomic classification

Streptomyces phaeofaciens DSM 40367 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming mesophilic genome sequence 16S sequence Bacteria

SI-ID 45576

ATCC 15034, NRRL B-1516, IFO 13372, DSM 40367, JCM 4125, JCM 4814, VKM Ac-1865, CBS 426.64, CBS 673.72, NBRC 13372, BCRC 16223, CCRC 16223, CGMCC 4.1984

Last LPSN update 2024-12-09 10:44:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces phaeofaciens

Full scientific name Streptomyces phaeofaciens Maeda et al. 1952 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces phaeofaciens** (17)	Type strain
126492	S. phaeofaciens ST033560(HKI),
126493	S. phaeofaciens ST033563(HKI),
126494	S. phaeofaciens ST023794(HKI),
126495	S. phaeofaciens ST023797(HKI),
126496	S. phaeofaciens ST027476(HKI), GT20024045,
126497	S. phaeofaciens ST026116(HKI),
126498	S. phaeofaciens ST023353(HKI), GT19994048,
126499	S. phaeofaciens STI07142(IMET), LL-W176,
126500	S. phaeofaciens STI07143(IMET), N10,
126501	S. phaeofaciens ST026525(HKI),
126502	S. phaeofaciens ST026539(HKI), Lorenz F1101-89.2, GT20024002,
126503	S. phaeofaciens ST026540(HKI), GT20024003, Lorenz I1101-89.1,
126504	S. phaeofaciens ST026547(HKI), GT20024010,
126505	S. phaeofaciens ST002850(HKI), GT19994037,
126506	S. phaeofaciens ST024327(HKI),
126507	S. phaeofaciens ST026538(HKI), GT20024001, Lorenz A1101-73.1,
126508	S. phaeofaciens ST026568(HKI), GT20024031,

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.8
125439		91.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9287	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9287	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe provided by DSMZ

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9287	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		93

Compound production

@ref	Compound
9287	phaeofacin (anti-fungal)
67770	Phaeofacin

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

9287

Sample typesoil

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
9287	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces kishiwadensis strain CGMCC 4.1984 16S ribosomal RNA gene, partial sequence	HQ244462	1387	67310
20218	Streptomyces phaeofaciens gene for 16S rRNA, partial sequence	AB122721	564	1306182
20218	Streptomyces phaeofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4814	D44381	120	1306182
20218	Streptomyces phaeofaciens gene for 16S rRNA, partial sequence, strain: NBRC 13372	AB184360	1476	1306182
20218	Streptomyces phaeofaciens strain NRRL B-1516T 16S ribosomal RNA gene, partial sequence	DQ442539	1413	1306182

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Streptomyces phaeofaciens JCM 4125	GCA_014648915	scaffold		68254
66792	Streptomyces phaeofaciens JCM 4814	GCA_001315485	contig		1306182
66792	Streptomyces phaeofaciens JCM 4814	1306182.6	wgs	PATRIC	1306182
66792	Streptomyces phaeofaciens strain JCM 4125	68254.3	wgs	PATRIC	68254
66792	Streptomyces phaeofaciens JCM 4814	2734481990	draft	JGI IMG/M	1306182

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Streptomyces phaeofaciens JCM 4125
NCBI: GCA_014648915

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	93.00	no
125439	motility	BacteriaNetⓘ	no	91.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from Diaspora project based on:
Streptomyces phaeofaciens JCM 4814
PATRIC: 1306182.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.66	no
125438	anaerobic	anaerobicⓘ	no	94.54	no
125438	spore-forming	spore-formingⓘ	yes	73.19	no
125438	aerobic	aerobicⓘ	yes	84.97	no
125438	thermophilic	thermophileⓘ	no	90.11	yes
125438	flagellated	motile2+ⓘ	no	89.50	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
84555	45576	ATCC 15034, NRRL B-1516, IFO 13372, DSM 40367, JCM 4125, JCM 4814, VKM Ac-1865, CBS 426.64, CBS 673.72, NBRC 13372, BCRC 16223, CCRC 16223, CGMCC 4.1984

Culture collection no.

Culture collection no.
DSM 40367
ATCC 15034
CBS 426.64
CBS 637.72
IFO 13372
ISP 5367
JCM 4125
JCM 4814
NBRC 13372
NRRL B-1516
RIA 1333
RIA 753
VKM Ac-1865
IFM 1177
CGMCC 4.1984
CBS 673.72
BCRC 16223

References

#9287	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40367
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#84555	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45576.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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