Cite this strain

Campylobacter peloridis (CCUG 55787, LMG 23910)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 154935

Type strain

Culture col. no. CCUG 55787 LMG 23910

NCBI tax ID(s) 1388753 488546

Special Collections CCUG

Links

Name and taxonomic classification

Campylobacter peloridis CCUG 55787 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Shellfish.

Gram-negative microaerophile mesophilic genome sequence 16S sequence Bacteria

SI-ID 26705

LMG 23910, CCUG 55787

Last LPSN update 2024-12-09 10:51:40

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter peloridis

Full scientific name Campylobacter peloridis Debruyne et al. 2009

BacDive ID	Other strains from **Campylobacter peloridis** (2)	Type strain
154938	C. peloridis CCUG 55790, LMG 23916
154939	C. peloridis CCUG 55791, LMG 11251

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.5
125438	negative	97.477

Colony morphology

60729

Incubation period3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
60729	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.3
125438		96.945

Oxygen tolerance

@ref	Oxygen tolerance
60729	microaerophile
125439	obligate aerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
60729	Shellfish	1993	Netherlands	NLD	Europe

Safety information

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Campylobacter peloridis partial 16S ribosomal RNA gene, type strain LMG 23910T	AM922331	1497		488546

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Campylobacter peloridis LMG 23910	GCA_000816785	complete		1388753
66792	Campylobacter peloridis LMG 23910	1388753.5	complete	PATRIC	1388753
66792	Campylobacter peloridis LMG 23910	1388753.7	plasmid	PATRIC	1388753
66792	Campylobacter peloridis LMG 23910	1388753.6	plasmid	PATRIC	1388753
66792	Campylobacter peloridis LMG 23910	2627854132	complete	JGI IMG/M	1388753

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Campylobacter peloridis LMG 23910
PATRIC: 1388753.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.30	no
125439	motility	BacteriaNetⓘ	no	66.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.00	no

Predictions from Diaspora project based on:
Campylobacter peloridis LMG 23910 LMG 23910
NCBI: GCA_000816785.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	no
125438	anaerobic	anaerobicⓘ	no	80.71	yes
125438	aerobic	aerobicⓘ	no	86.56	yes
125438	spore-forming	spore-formingⓘ	no	96.95	no
125438	thermophilic	thermophileⓘ	no	87.64	yes
125438	flagellated	motile2+ⓘ	yes	63.72	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov.	Debruyne L, On SL, De Brandt E, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.000851-0	2009

Straininfo Link

@ref	Straininfo	Culture collections
108461	26705	LMG 23910, CCUG 55787

Culture collection no.

Culture collection no.
CCUG 55787
LMG 23910

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60729	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55787
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#108461	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID26705.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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