Cite this strain

Achromobacter anxifer (CCUG 62444, LMG 26857, CIP 110712)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156534

Type strain

Strain Designation Vandamme R-47433, LiPuma AU11412

Culture col. no. CCUG 62444 LMG 26857 CIP 110712 Vandamme R-47433 LiPuma AU11412

NCBI tax ID(s) 1287737

Special Collections CCUG CIP

Links

Name and taxonomic classification

Achromobacter anxifer Vandamme R-47433 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human sputum, CF patient.

Gram-negative aerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 376313

LMG 26857, CCUG 62444

Last LPSN update 2024-12-09 10:51:51

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter anxifer

Full scientific name Achromobacter anxifer Vandamme et al. 2014

BacDive ID	Other strains from **Achromobacter anxifer** (2)	Type strain
156535	A. anxifer CCUG 62445, LMG 26858
157257	A. anxifer CCUG 71677

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	97.597
116418	negative

Colony morphology

62848

Incubation period1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
116418	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
62848	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.8

Oxygen tolerance

@ref	Oxygen tolerance
62848	aerobe
125438	aerobe
125439	obligate aerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body Product	#Fluids
#Infection	#Disease
#Infection	#Patient

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
62848	human sputum, CF patient	USA	USA	North America
116418	Human, Sputum	United States of America	USA	North America

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
116418	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Achromobacter anxifer partial 16S rRNA gene, type strain LMG 26857T	HF586508	1483		1287737

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Achromobacter anxifer LMG 26857	GCA_903652925	contig		1287737
66792	Achromobacter anxifer strain LMG 26857	1287737.4	wgs	PATRIC	1287737

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Achromobacter anxifer LMG 26857
NCBI: GCA_903652925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	yes	85.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from Diaspora project based on:
Achromobacter anxifer strain LMG 26857
PATRIC: 1287737.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.60	no
125438	anaerobic	anaerobicⓘ	no	97.98	yes
125438	spore-forming	spore-formingⓘ	no	89.36	no
125438	aerobic	aerobicⓘ	yes	91.12	yes
125438	thermophilic	thermophileⓘ	no	99.99	no
125438	flagellated	motile2+ⓘ	yes	86.41	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Achromobacter aestuarii sp. nov., Isolated from an Estuary.	Kim SC, Chung SO, Lee HJ	Curr Microbiol	10.1007/s00284-020-02231-9	2020
Phylogeny	Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.	Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2013.06.005	2013

Straininfo Link

@ref	Straininfo	Culture collections
109755	376313	LMG 26857, CCUG 62444

Culture collection no.

Culture collection no.
CCUG 62444
LMG 26857
CIP 110712
Vandamme R-47433
LiPuma AU11412

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62848	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62444
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#109755	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376313.1 )
#116418	Collection of Institut Pasteur ; Curators of the CIP; CIP 110712
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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