Cite this strain

Changchengzhania lutea (JCM 30336, CCTCC AB 2014246, SM1355)

BacDive ID 158533

Type strain

Strain Designation SM1355

Culture col. no. JCM 30336 CCTCC AB 2014246 SM1355

NCBI tax ID(s) 2049305

Special Collections JCM Literature strains

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Changchengzhania lutea SM1355 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from intertidal sandy sediment sample.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132295

JCM 30336

@ref 20215

Last LPSN update 2026-02-09 11:38:21

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Changchengzhania

Species Changchengzhania lutea

Full scientific name Changchengzhania lutea Wang et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
65218	negative	1.5-3.0 µm	0.4-0.6 µm	rod-shaped
125439	negative
125438
125438	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65218	2-4 mm	yellow (carotenoid) pigmented	circular	3-5 days	tryptic soy agar

Pigmentation

@ref	Production	Name
65218		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
65218	tryptic soy agar

Culture temp

@ref	Growth	Type	Temperature (°C)
65218	positive	growth	4-35
65218	positive	optimum	20
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH
65218	positive	optimum	7.5
65218	positive	growth	6.0-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
65218	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		94.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65218	NaCl	positive	growth	0.5-7 %(w/v)
65218	NaCl	positive	optimum	1-2 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65218	17128 ChEBI	adipate	-	growth
65218	17634 ChEBI	D-glucose	-	growth
65218	16899 ChEBI	D-mannitol	-	growth
65218	16024 ChEBI	D-mannose	-	growth
65218	27689 ChEBI	decanoate	-	growth
65218	16991 ChEBI	dna	-	hydrolysis
65218	4853 ChEBI	esculin	+	hydrolysis
65218	17234 ChEBI	glucose	+	builds acid from
65218	30849 ChEBI	L-arabinose	-	growth
65218	17895 ChEBI	L-tyrosine	-	hydrolysis
65218	25115 ChEBI	malate	-	growth
65218	17306 ChEBI	maltose	-	growth
65218	506227 ChEBI	N-acetylglucosamine	-	growth
65218	17632 ChEBI	nitrate	-	reduction
65218	18401 ChEBI	phenylacetate	-	growth
65218	32032 ChEBI	potassium gluconate	-	growth
65218	53258 ChEBI	sodium citrate	-	growth
65218	28017 ChEBI	starch	-	hydrolysis
65218	53424 ChEBI	tween 20	+	hydrolysis
65218	53423 ChEBI	tween 40	+	hydrolysis
65218	53425 ChEBI	tween 60	+	hydrolysis
65218	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65218	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65218	acid phosphatase	+	3.1.3.2
65218	alkaline phosphatase	+	3.1.3.1
65218	alpha-chymotrypsin	+	3.4.21.1
65218	alpha-fucosidase	-	3.2.1.51
65218	alpha-galactosidase	-	3.2.1.22
65218	alpha-glucosidase	+	3.2.1.20
65218	alpha-mannosidase	-	3.2.1.24
65218	arginine dihydrolase	-	3.5.3.6
65218	beta-galactosidase	-	3.2.1.23
65218	beta-glucosidase	-	3.2.1.21
65218	beta-glucuronidase	-	3.2.1.31
65218	catalase	+	1.11.1.6
65218	cystine arylamidase	+	3.4.11.3
65218	cytochrome oxidase	+	1.9.3.1
65218	esterase (C 4)	+
65218	esterase Lipase (C 8)	+
65218	gelatinase	-
65218	leucine arylamidase	+	3.4.11.1
65218	lipase (C 14)	-
65218	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65218	naphthol-AS-BI-phosphohydrolase	+
65218	trypsin	+	3.4.21.4
65218	urease	-	3.5.1.5
65218	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65218

Fatty acid	Percentage
C15:0 anteiso	16.6
C15:0 iso	14.2
C15:1 iso G	12.6
C17:1 iso ω9c	7.1
C15:0 iso 3OH	7.1
C17:0 iso 3OH	6.6
C17:1 anteiso ω9c	6.1
C17:0 2OH	5.3
C15:1 anteiso A	5.2
C16:1ω7c and/or C15:0 Iso 2OH	4
C15:0	3.3
C16:0 iso 3OH	2.2
C15:0 2-OH	1.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65218	intertidal sandy sediment sample	2013-02	seashore area near the Chinese Antarctic Great Wall Station	Antarctica	ATA	Australia and Oceania	-62.2172	-58.9583 -62.2172/-58.9583	tryptic soy agar	0.5 % tryptone (Oxoid), 0.1 % yeast extract (Oxoid), 1.5 % agar and artificial seawater	2-4 weeks	15	10 g sample was suspended into 100 ml sterile artificial seawater [prepared using Sigma sea salts (3 %)] and shaken at 100 r.p.m. at 15°C for 2 h. The obtained sus-pension was further serially diluted (10-fold, up to the 10^-6 dilution) using sterile artificial seawater. Aliquots of 200 µl diluted sample (10^-3 - 10^-6 dilution) were then spread onTYS agar.
67770	Antarctic intertidal sediment collected near the Chinese Antarctic Great Wall Station

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM697414v1 assembly for Changchengzhania lutea SM1355	complete	GCA_006974145	2049305.4	2883400621	2049305	99.06

Genome browser: GCA_006974145

16S sequences

@ref	Description	Accession	Database
65218	Changchengzhania lutea strain SM1355 16S ribosomal RNA gene, partial sequence	MF040694

GC content

@ref	GC-content (mol%)	Method
67770	36.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Changchengzhania lutea SM1355
PATRIC: 2883400621

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.40	no
125439	motility	BacteriaNetⓘ	no	73.90	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from Diaspora project based on:
Changchengzhania lutea SM1355
NCBI: GCA_006974145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.95	yes
125438	anaerobic	anaerobicⓘ	no	93.07	yes
125438	aerobic	aerobicⓘ	yes	84.04	yes
125438	spore-forming	spore-formingⓘ	no	88.50	no
125438	thermophilic	thermophileⓘ	no	99.47	yes
125438	flagellated	motile2+ⓘ	no	93.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Changchengzhania lutea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from Antarctic intertidal sediment.	Wang N, Xu F, Zhang XY, Chen XL, Qin QL, Zhou BC, Zhang YZ, Shi M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002439	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65218	Ning Wang, Fei Xu, Xi-Ying Zhang, Xiu-Lan Chen, Qi-Long Qin, Bai-Cheng Zhou, Yu-Zhong Zhang, Mei Shi: Changchengzhania lutea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from Antarctic intertidal sediment. IJSEM 67: 5187 - 5192 2017 ( DOI 10.1099/ijsem.0.002439 , PubMed 29068279 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Changchengzhania lutea (JCM 30336, CCTCC AB 2014246, SM1355)

Name and taxonomic classification