Cite this strain

Ligilactobacillus agilis (DSM 102821, WCA-389-WT-5H1)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158984

Type strain

Strain Designation WCA-389-WT-5H1

Culture col. no. DSM 102821 WCA-389-WT-5H1

NCBI tax ID(s) 1601

Special Collections DSMZ Pig DZIF

Links

Name and taxonomic classification

Ligilactobacillus agilis WCA-389-WT-5H1 is a mesophilic, Gram-positive bacterium that was isolated from feces; pig, 3.5 month old, wild type.

Gram-positive mesophilic genome sequence 16S sequence Bacteria

SI-ID 400520

DSM 102821

Last LPSN update 2024-12-09 10:52:08

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus agilis

Full scientific name Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020

Synonyms (1)

Lactobacillus agilis

BacDive ID	Other strains from **Ligilactobacillus agilis** (8)	Type strain
6407	L. agilis 262, DSM 20509, NCIB 11716, CCUG 31450, JCM ... (type strain)
6406	L. agilis 123, DSM 20508
6408	L. agilis 298, DSM 20510
160073	L. agilis Cla-CZ-26, DSM 109014
160961	L. agilis JCM 1048, ATCC 43564
160964	L. agilis JCM 1049, KCTC 3158
160967	L. agilis JCM 1050, ATCC 43616
165567	L. agilis JCM 7701

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.01

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65807	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
65807	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65807	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	97.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65807	feces; pig, 3.5 month old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537457 (>99% sequence identity) for Ligilactobacillus agilis subclade from Microbeatlas

Aquatic Samples	1961
Soil Samples	1642
Animal Samples	36795
Plant Samples	892
Total Samples	41290

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
65807	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65807	Ligilactobacillus agilis strain DSM 102821 16S ribosomal RNA gene, partial sequence	MN537457	1511		1601

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Ligilactobacillus agilis WCA-389-WT-5H1	GCA_012843665	contig		1601

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Ligilactobacillus agilis WCA-389-WT-5H1
NCBI: GCA_012843665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	58.50	no
125439	motility	BacteriaNetⓘ	no	58.40	no
125439	gram_stain	BacteriaNetⓘ	variable	68.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.40	no

Predictions from Diaspora project based on:
Ligilactobacillus agilis WCA-389-WT-5H1
NCBI: GCA_012843665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.01	no
125438	anaerobic	anaerobicⓘ	no	82.48	no
125438	aerobic	aerobicⓘ	no	98.00	no
125438	spore-forming	spore-formingⓘ	no	79.38	no
125438	thermophilic	thermophileⓘ	no	94.33	yes
125438	flagellated	motile2+ⓘ	yes	59.83	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
111500	400520	DSM 102821

Culture collection no.

Culture collection no.
DSM 102821
WCA-389-WT-5H1

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65807	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102821
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#111500	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400520.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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