Cite this strain

Olsenella porci (DSM 105246, CA-Schmier-601-WT1, JCM 34369)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159042

Type strain

Strain Designation CA-Schmier-601-WT1, CA-Schmier-601-WT-1

Culture col. no. DSM 105246 CA-Schmier-601-WT1 JCM 34369 CA-Schmier-601-WT-1

NCBI tax ID(s) 2652279

Special Collections DSMZ JCM Pig DZIF

Links

Name and taxonomic classification

Olsenella porci CA-Schmier-601-WT1 is a mesophilic bacterium that was isolated from pig, WT, 1 year old, feces.

mesophilic genome sequence 16S sequence Bacteria

SI-ID 400942

DSM 105246

Last LPSN update 2024-12-09 10:52:08

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Coriobacteriales

Family Atopobiaceae

Genus Olsenella

Species Olsenella porci

Full scientific name Olsenella porci Wylensek et al. 2021

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90.125

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65865	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65865	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.1

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	93.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65865	pig, WT, 1 year old, feces	Kranzberg (Bavaria)	Germany	DEU	Europe
67770	Feces of a German Landrace pig	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537480 (>99% sequence identity) for Olsenella porci subclade from Microbeatlas

Aquatic Samples	225
Soil Samples	126
Animal Samples	1870
Plant Samples	37
Total Samples	2258

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	64.9	genome sequence analysis

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65865	Olsenella porci strain CA-Schmier-601-WT-1 16S ribosomal RNA gene, partial sequence	MN537480	1463		2652279

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Olsenella porci CA-Schmier-601-WT-1	GCA_009695875	contig		2652279
66792	Olsenella sp. CA-Schmier-601-WT-1	2605787.3	wgs	PATRIC	2652279

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Olsenella porci CA-Schmier-601-WT-1
NCBI: GCA_009695875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.10	no
125439	motility	BacteriaNetⓘ	yes	51.20	no
125439	gram_stain	BacteriaNetⓘ	positive	68.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	93.10	no

Predictions from Diaspora project based on:
Olsenella sp. CA-Schmier-601-WT-1
PATRIC: 2605787.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.70	no
125438	anaerobic	anaerobicⓘ	yes	87.58	no
125438	spore-forming	spore-formingⓘ	no	74.31	no
125438	aerobic	aerobicⓘ	no	95.38	no
125438	thermophilic	thermophileⓘ	no	93.68	no
125438	flagellated	motile2+ⓘ	no	90.13	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
111556	400942	DSM 105246

Culture collection no.

Culture collection no.
DSM 105246
CA-Schmier-601-WT1
JCM 34369
CA-Schmier-601-WT-1

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65865	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105246
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#111556	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400942.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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