Cite this strain

Pseudomonas saxonica (DSM 108989, LMG 31234, WS 5072)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159623

Type strain

Strain Designation WS 5072

Culture col. no. DSM 108989 LMG 31234 WS 5072

NCBI tax ID(s) 2600598

Special Collections DSMZ

Links

Name and taxonomic classification

Pseudomonas saxonica WS 5072 is an aerobe, mesophilic, motile bacterium that was isolated from skim milk concentrate.

motile aerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 400476

DSM 108989

Last LPSN update 2024-12-09 10:52:12

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas saxonica

Full scientific name Pseudomonas saxonica Hofmann et al. 2020

BacDive ID	Other strains from **Pseudomonas saxonica** (1)	Type strain
159624	P. saxonica WS 5092, DSM 108990, LMG 31235

Morphology

Cell morphology

@ref	Motility	Confidence
125438		91.092
125438		99
125439		97.4

Multimedia

@ref:	66458
manual_annotation:	1
multimedia content:	DSM_108989.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_108989.jpg
caption:	DSM 108989 in DSMZ medium 535 at 28 °C
intellectual property rights:	© Leibniz-Institut DSMZ

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66458	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
66458	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66458	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.896

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66458	skim milk concentrate	Leppersdorf (48° 38' 48" N, 9° 25' 44.0" E)	Germany	DEU	Europe

Safety information

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66458	Pseudomonas saxonica strain DSM 108989 RNA polymerase sigma factor RpoD (rpoD) gene, partial cds	MN068213	683		2600598

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Pseudomonas saxonica DSM 108989	GCA_007858365	contig		2600598
66792	Pseudomonas sp. DSM 108989	2600598.3	wgs	PATRIC	2600598

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Pseudomonas saxonica DSM 108989
NCBI: GCA_007858365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.00	no
125439	motility	BacteriaNetⓘ	yes	80.40	no
125439	gram_stain	BacteriaNetⓘ	negative	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.90	no

Predictions from Diaspora project based on:
Pseudomonas sp. DSM 108989
PATRIC: 2600598.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	98.22	no
125438	spore-forming	spore-formingⓘ	no	87.23	no
125438	aerobic	aerobicⓘ	yes	90.90	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	91.09	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.	Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004822	2021
Phylogeny	Pseudomonas saxonica sp. nov., isolated from raw milk and skimmed milk concentrate.	Hofmann K, Huptas C, Doll EV, Scherer S, Wenning M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003851	2020

Straininfo Link

@ref	Straininfo	Culture collections
112097	400476	DSM 108989

Culture collection no.

Culture collection no.
DSM 108989
LMG 31234
WS 5072

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66458	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108989
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#112097	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400476.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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