Cite this strain

"Agrobacterium bohemicum" (DSM 104667, CCM 8736, R90)

BacDive ID 160172

Type strain

Strain Designation R90

Culture col. no. DSM 104667 CCM 8736 R90

NCBI tax ID(s) 2052828

Special Collections DSMZ

Links

"Agrobacterium bohemicum" R90 is a mesophilic prokaryote that was isolated from Papaver somniferum composted wastes.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 402784

LMG 31157,DSM 104667

@ref 20215

Last LPSN update 2025-12-16 10:08:26

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Agrobacterium

Species "Agrobacterium bohemicum"

Full scientific name Agrobacterium bohemicum Zahradnik et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.333
125439	negative	99.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67076	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67076	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98

Spore formation

@ref	Spore formation	Confidence
125438		90.914
125439		98.7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67076	Papaver somniferum composted wastes	Neratovice (50.2592242 N, 14.4855406 E)	Czech Republic	CZE	Europe	50.2592	14.4855 50.2592/14.4855

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM289671v1 assembly for Agrobacterium bohemicum R90	contig	GCA_002896715	2052828.3	2052828	71.18

Genome browser: GCA_002896715

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Agrobacterium bohemicum R90
NCBI: GCA_002896715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	59.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.00	no

Predictions from Diaspora project based on:
Agrobacterium bohemicum strain R90
PATRIC: 2052828.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.33	no
125438	anaerobic	anaerobicⓘ	no	96.79	no
125438	spore-forming	spore-formingⓘ	no	90.91	no
125438	aerobic	aerobicⓘ	yes	86.77	no
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	65.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agrobacterium bohemicum sp. nov. isolated from poppy seed wastes in central Bohemia.	Zahradnik J, Nunvar J, Parizkova H, Kolarova L, Palyzova A, Maresova H, Grulich M, Kyslikova E, Kyslik P	Syst Appl Microbiol	10.1016/j.syapm.2018.01.003	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67076	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104667
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Agrobacterium bohemicum" (DSM 104667, CCM 8736, R90)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002896715

Genome-based predictions

Predictions

Literature

Literature

References

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