Cite this strain

Lactobacillus nasalidis (DSM 110539, JCM 33769, YZ01)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160218

Type strain

Strain Designation YZ01

Culture col. no. DSM 110539 JCM 33769 YZ01

NCBI tax ID(s) 2797258

Special Collections DSMZ JCM

Links

Name and taxonomic classification

Lactobacillus nasalidis YZ01 is a mesophilic bacterium that was isolated from Probocis monkey, forestomach content.

mesophilic genome sequence 16S sequence Bacteria

SI-ID 405797

DSM 110539

Last LPSN update 2024-12-09 10:52:16

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus nasalidis

Full scientific name Lactobacillus nasalidis Suzuki-Hashido et al. 2021

Morphology

Cell morphology

@ref	Motility	Confidence
125438		96.5
125438		94.389
125439		93.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67122	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67122	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate anaerobe	98

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67122	Probocis monkey, forestomach content	Yokohama city	Japan	JPN	Asia
67770	Forestomach of a captive proboscis monkey (Nasalis larvatus)	Yokohama Zoo	Japan	JPN	Asia

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	51.6	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lactobacillus nasalidis YZ01 gene for 16S ribosomal RNA, partial sequence	LC495593	1442		2797258

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Lactobacillus sp. YZ01	2797258.3	wgs	PATRIC	2797258
67770	Lactobacillus nasalidis YZ01	GCA_016587775	scaffold		2797258

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Lactobacillus nasalidis YZ01
NCBI: GCA_016587775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	74.50	no
125439	gram_stain	BacteriaNetⓘ	negative	93.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.00	no

Predictions from Diaspora project based on:
Lactobacillus sp. YZ01
PATRIC: 2797258.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.39	no
125438	anaerobic	anaerobicⓘ	no	77.78	no
125438	spore-forming	spore-formingⓘ	no	87.42	no
125438	aerobic	aerobicⓘ	no	96.90	no
125438	thermophilic	thermophileⓘ	no	94.27	yes
125438	flagellated	motile2+ⓘ	no	96.50	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus).	Suzuki-Hashido N, Tsuchida S, Hayakawa T, Sakamoto M, Azumano A, Seino S, Matsuda I, Ohkuma M, Ushida K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004787	2021

Straininfo Link

@ref	Straininfo	Culture collections
112482	405797	DSM 110539

Culture collection no.

Culture collection no.
DSM 110539
JCM 33769
YZ01

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67122	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110539
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#112482	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405797.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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